View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_10 (Length: 556)
Name: NF21233_low_10
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_10 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Complemental strand, 45879 - 45342
Alignment:
| Q |
19 |
agtcatgtctggtatttgacatctgttagtgtctaacatcaacacaacactgacaggtataattacattttattatgctannnnnnnaaattattatcgg |
118 |
Q |
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| T |
45879 |
agtcatgtctggtatttgacatctgttagtgtctaacatcaacacaacactgacaggtataattacattttattatgctatttttttaaattattatcgg |
45780 |
T |
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| Q |
119 |
tctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaacca |
218 |
Q |
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| T |
45779 |
tctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaacca |
45680 |
T |
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| Q |
219 |
accatttgatcggttaaattgattaattagtacttttctttttgtgttaatatattaggttttattatttgcttactttttaataccgtggcatttgaat |
318 |
Q |
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| T |
45679 |
accatttgatcggttaaattgattaattagtacttttctttttgtgttaatatattaggttttattatttgcttactttttaataccgtggcatttgaat |
45580 |
T |
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| Q |
319 |
ttttaagtatttgatgcgcttttcattttaaaagcagattaaaattgactttaagaaaaatgtaattgaggaaatagtatttgcaactttttggatacta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45579 |
ttttaagtatttgatgcgcttttcattttaaaagcagattaaaattgactttaagaaaaatgtaattgaggaaatagtatttgcaactttttggatacta |
45480 |
T |
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| Q |
419 |
agaagcaaacctagtttttgtttaagcatgacaggggttttatagaaaaaggctgtttactgaaatttggattgttatatcaaggtttttgatgtcttta |
518 |
Q |
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| T |
45479 |
agaagcaaacctagtttttgtttaagcatgacaggggttttatagaaaaaggctgtttactgaaatttggattgttatatcaaggtttttgatgtcttta |
45380 |
T |
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| Q |
519 |
tgatcgcatagaagtatatttaacaattattctctgta |
556 |
Q |
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| T |
45379 |
tgatcgcatagaagtatatttaacaattattctctgta |
45342 |
T |
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