View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_low_11 (Length: 535)

Name: NF21233_low_11
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21233_low_11
NF21233_low_11
[»] chr1 (22 HSPs)
chr1 (19-528)||(14664185-14664690)
chr1 (231-528)||(14654394-14654691)
chr1 (252-528)||(14669763-14670038)
chr1 (347-528)||(14705960-14706141)
chr1 (301-528)||(14716119-14716344)
chr1 (363-528)||(14676520-14676685)
chr1 (363-528)||(14683638-14683803)
chr1 (303-528)||(14708407-14708631)
chr1 (369-528)||(14652419-14652578)
chr1 (369-528)||(14662210-14662369)
chr1 (301-528)||(14674300-14674534)
chr1 (301-528)||(14679678-14679912)
chr1 (376-528)||(14681501-14681652)
chr1 (400-522)||(14667171-14667292)
chr1 (443-528)||(33988038-33988123)
chr1 (466-528)||(28366253-28366315)
chr1 (252-345)||(14676443-14676536)
chr1 (252-345)||(14683561-14683654)
chr1 (468-528)||(38175584-38175644)
chr1 (478-528)||(11872535-11872585)
chr1 (481-528)||(37422175-37422222)
chr1 (471-516)||(28698549-28698594)
[»] chr2 (23 HSPs)
chr2 (252-528)||(30731786-30732061)
chr2 (379-528)||(32917986-32918133)
chr2 (443-528)||(8979290-8979375)
chr2 (443-522)||(8973280-8973359)
chr2 (443-522)||(9023415-9023494)
chr2 (443-528)||(9026754-9026839)
chr2 (400-528)||(30733914-30734041)
chr2 (443-528)||(9032021-9032106)
chr2 (468-528)||(43850042-43850102)
chr2 (443-522)||(8984661-8984740)
chr2 (443-528)||(9020815-9020900)
chr2 (443-528)||(9030366-9030451)
chr2 (472-528)||(9008018-9008074)
chr2 (474-528)||(2841071-2841125)
chr2 (443-528)||(8988423-8988508)
chr2 (443-528)||(9016461-9016546)
chr2 (477-528)||(19232453-19232504)
chr2 (443-522)||(8992116-8992195)
chr2 (205-245)||(8979048-8979088)
chr2 (478-513)||(39814115-39814150)
chr2 (482-528)||(10763932-10763978)
chr2 (443-504)||(8975663-8975724)
chr2 (203-252)||(8995547-8995596)
[»] chr8 (11 HSPs)
chr8 (443-528)||(41841206-41841291)
chr8 (443-528)||(44878951-44879036)
chr8 (443-528)||(44880885-44880970)
chr8 (399-528)||(10944453-10944581)
chr8 (475-528)||(40054312-40054365)
chr8 (477-528)||(37679757-37679808)
chr8 (468-518)||(42872514-42872564)
chr8 (475-528)||(37682057-37682110)
chr8 (467-518)||(42220909-42220960)
chr8 (467-521)||(42555144-42555198)
chr8 (492-528)||(44582870-44582906)
[»] chr6 (4 HSPs)
chr6 (443-528)||(10795944-10796029)
chr6 (466-528)||(10791706-10791768)
chr6 (475-528)||(30521242-30521295)
chr6 (477-528)||(8875691-8875742)
[»] chr4 (11 HSPs)
chr4 (443-528)||(50077253-50077338)
chr4 (463-528)||(11652446-11652511)
chr4 (467-528)||(49106583-49106644)
chr4 (443-528)||(49108687-49108772)
chr4 (466-528)||(3461196-3461258)
chr4 (476-528)||(26984721-26984773)
chr4 (476-528)||(26998794-26998846)
chr4 (476-522)||(48205832-48205878)
chr4 (482-521)||(26982549-26982588)
chr4 (343-375)||(23267684-23267716)
chr4 (480-516)||(34481155-34481191)
[»] chr5 (4 HSPs)
chr5 (443-528)||(1716506-1716591)
chr5 (468-528)||(7524961-7525021)
chr5 (475-528)||(3643640-3643693)
chr5 (479-528)||(4103249-4103298)
[»] chr3 (1 HSPs)
chr3 (477-522)||(15758563-15758608)


Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 14664690 - 14664185
Alignment:
Q  19 accaacaaatatcggaattgtgagaaaaaagagaaatcactcggtccctctcctttccaaattccaaggatcttagttgtttggtttgatacttggccaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664690 accaacaaatatcggaattgtgagaaaaaagagaaatcactcagtccctctcctttccaaattccaaggatcttagttgtttggtttgatacttggccaa 14664591  T
Q  119 acttcgttactagacgtctttagtctattgtttgcgattattattgtttcttttctctttcgaagctgtttgttgttctatcaataatctttaattcctc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14664590 acttcgttactagacgtctttagtctattgtttgcgattattatt----cttttctctttcgaagctgtttgttgttctatcgataatctttaattcctc 14664495  T
Q  219 aactttagttttacttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664494 aactttagttttacttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaat 14664395  T
Q  319 gctttagtggcctctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtca 418  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664394 gctttagtggcctctatgttggcaatatcctctgcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtca 14664295  T
Q  419 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 518  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664294 agaaagcaactgagaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 14664195  T
Q  519 gttcatatca 528  Q
    |||| |||||    
T  14664194 gttcttatca 14664185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 231 - 528
Target Start/End: Complemental strand, 14654691 - 14654394
Alignment:
Q  231 acttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654691 acttatgcattaatgaccactatgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcc 14654592  T
Q  331 tctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactg 430  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654591 tctatgttggcaatatcctctgcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactg 14654492  T
Q  431 agaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14654491 agaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14654394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 252 - 528
Target Start/End: Complemental strand, 14670038 - 14669763
Alignment:
Q  252 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctct 351  Q
    ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| || ||||| |||| || |||||    
T  14670038 atgaccattaccattaccattgattgtttctaggtgatgcaagttctaatggatgaattggtgaaatgctttagtgggctgtatgttggca-taacctct 14669940  T
Q  352 gcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 451  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  14669939 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 14669840  T
Q  452 cagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14669839 cagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14669763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 347 - 528
Target Start/End: Original strand, 14705960 - 14706141
Alignment:
Q  347 cctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatat 446  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||  | ||| ||||    
T  14705960 cctctgcttggtaattgctctttgttggcaacacatgcatacaatgagaaatagtcccacatcgagcagtcaagaaagaaactgagaacgtttctgatat 14706059  T
Q  447 aaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14706060 aaaagcagcaccgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14706141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 301 - 528
Target Start/End: Original strand, 14716119 - 14716344
Alignment:
Q  301 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatag 400  Q
    |||||||||||||||||| | || |||| |||||||| |    ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14716119 tggatgaattggtgaaatacgttggtgggctctatgttgcg--tatgctctgcttggaaattgctctttgttggcaacacatgcgtacaatgagaaatag 14716216  T
Q  401 tcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggcta 500  Q
    |||||||| ||||||||| ||||  ||||||||| |||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  14716217 tcccacattgagcagtcacgaaaataactgagaagatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggccttttggcta 14716316  T
Q  501 agatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||| |||||    
T  14716317 agatcaagtgtagtatctgttcttatca 14716344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 363 - 528
Target Start/End: Original strand, 14676520 - 14676685
Alignment:
Q  363 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagt 462  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  14676520 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14676619  T
Q  463 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14676620 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14676685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 363 - 528
Target Start/End: Original strand, 14683638 - 14683803
Alignment:
Q  363 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagt 462  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||||    
T  14683638 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14683737  T
Q  463 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14683738 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14683803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 303 - 528
Target Start/End: Original strand, 14708407 - 14708631
Alignment:
Q  303 gatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtc 402  Q
    ||||||||| ||||||| ||||||||  ||| ||| |||| ||| ||||||||||||| ||||||||||||| ||| |||| || |||||||||||||||    
T  14708407 gatgaattgctgaaatgatttagtgggatctttgttggca-tatactctgcttggtaattgctctttgttggtaacgcatgtgtgcaatgagaaatagtc 14708505  T
Q  403 ccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaag 502  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||  ||  || ||||||||||||||||||||||||||||||||||||||||    
T  14708506 ccacatcgagcagtcaagaaagcaattgagaaaatgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggccttttggctaag 14708605  T
Q  503 atcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||| |||||    
T  14708606 atcaagtgtagtatctgttcttatca 14708631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 369 - 528
Target Start/End: Original strand, 14652419 - 14652578
Alignment:
Q  369 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatct 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |||| ||     
T  14652419 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14652518  T
Q  469 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14652519 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14652578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 369 - 528
Target Start/End: Original strand, 14662210 - 14662369
Alignment:
Q  369 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatct 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |||| ||     
T  14662210 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14662309  T
Q  469 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14662310 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14662369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 301 - 528
Target Start/End: Original strand, 14674300 - 14674534
Alignment:
Q  301 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctcttt-gttggc--------aacacatgcgtacaat 391  Q
    ||||||||||| ||||||| |||||||| |||||||| | || ||| | ||||||||||| | |||||| ||||||        ||||||||||||||||    
T  14674300 tggatgaattgttgaaatgatttagtgggctctatgttgaca-tatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgtacaat 14674398  T
Q  392 gagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggcc 491  Q
    | ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  14674399 gggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcc 14674497  T
Q  492 ttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14674498 ttttggctaagatcaagtgtagtatctgttcttatca 14674534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 301 - 528
Target Start/End: Original strand, 14679678 - 14679912
Alignment:
Q  301 tggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctctgcttggtaactgctcttt-gttggc--------aacacatgcgtacaat 391  Q
    ||||||||||| ||||||| |||||||| |||||||| | || ||| | ||||||||||| | |||||| ||||||        ||||||||||||||||    
T  14679678 tggatgaattgttgaaatgatttagtgggctctatgttgaca-tatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgtacaat 14679776  T
Q  392 gagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggcc 491  Q
    | ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  14679777 gggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcc 14679875  T
Q  492 ttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14679876 ttttggctaagatcaagtgtagtatctgttcttatca 14679912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 376 - 528
Target Start/End: Original strand, 14681501 - 14681652
Alignment:
Q  376 aacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaact 475  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| |||| ||||||||    
T  14681501 aacacatgcgtacaatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaaa-tgtctgatataaaagcagcacctagcccatttttcaact 14681599  T
Q  476 catacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
     |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14681600 tatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 14681652  T

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Target: chr1; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 14667292 - 14667171
Alignment:
Q  400 gtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggct 499  Q
    ||||||||||||| |||||||||| |||||||||| |||||  |||||||||||||||    || || ||  ||||||||||||||||||||||||||||    
T  14667292 gtcccacatcgaggagtcaagaaaacaactgagaacatgtcagatataaaagcagcaggatctc-atgttgtaactcatacctttctcggccttttggct 14667194  T
Q  500 aagatcaagtgtagtatctgttc 522  Q
    |||||||||||||||||||||||    
T  14667193 aagatcaagtgtagtatctgttc 14667171  T

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Target: chr1; HSP #15
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 33988038 - 33988123
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33988038 atataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 33988123  T

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Target: chr1; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 28366315 - 28366253
Alignment:
Q  466 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 28366253  T

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Target: chr1; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 14676443 - 14676536
Alignment:
Q  252 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaata 345  Q
    |||||| |||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  14676443 atgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaata 14676536  T

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Target: chr1; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 14683561 - 14683654
Alignment:
Q  252 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaata 345  Q
    |||||| |||| || | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  14683561 atgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaata 14683654  T

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Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 468 - 528
Target Start/End: Complemental strand, 38175644 - 38175584
Alignment:
Q  468 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 38175584  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 11872585 - 11872535
Alignment:
Q  478 tacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| |||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatca 11872535  T

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Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 528
Target Start/End: Original strand, 37422175 - 37422222
Alignment:
Q  481 ctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatca 37422222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 516
Target Start/End: Original strand, 28698549 - 28698594
Alignment:
Q  471 caactcatacctttctcggccttttggctaagatcaagtgtagtat 516  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

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Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 252 - 528
Target Start/End: Original strand, 30731786 - 30732061
Alignment:
Q  252 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgtcggcaatatcctct 351  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| || |||||    
T  30731786 atgaccattaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca-taacctct 30731884  T
Q  352 gcttggtaactgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 451  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  30731885 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 30731984  T
Q  452 cagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30731985 cagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 30732061  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 379 - 528
Target Start/End: Original strand, 32917986 - 32918133
Alignment:
Q  379 acatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcat 478  Q
    ||||||||||| |  ||||||||||||||||||| | |||||||||||||  |||||||| |  ||||||||||||||||||||| | | ||||||||||    
T  32917986 acatgcgtacagtaggaaatagtcccacatcgaggaatcaagaaagcaacatagaaaatg-cagatataaaagcagcagctagtcta-cattcaactcat 32918083  T
Q  479 acctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32918084 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 32918133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 8979290 - 8979375
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8979290 atataaaagcataagcaagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 8979375  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 443 - 522
Target Start/End: Original strand, 8973280 - 8973359
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 522  Q
    |||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8973359  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 443 - 522
Target Start/End: Original strand, 9023415 - 9023494
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 522  Q
    |||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9023494  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 9026754 - 9026839
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||  ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9026754 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 9026839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 528
Target Start/End: Original strand, 30733914 - 30734041
Alignment:
Q  400 gtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggct 499  Q
    ||||||||||||| |||||||||| ||| |||||| |||||  |||||||||||||||    || || ||  |||| |||||||||||||||||||||||    
T  30733914 gtcccacatcgaggagtcaagaaaacaagtgagaacatgtcagatataaaagcagcaggatctc-atgttgtaacttatacctttctcggccttttggct 30734012  T
Q  500 aagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||| |||||    
T  30734013 aagatcaagtgtagtatctgttcttatca 30734041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 9032021 - 9032106
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||  ||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9032021 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatca 9032106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 468 - 528
Target Start/End: Original strand, 43850042 - 43850102
Alignment:
Q  468 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 43850102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 443 - 522
Target Start/End: Original strand, 8984661 - 8984740
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 522  Q
    |||||||||||  ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8984661 atataaaagcataagcaagttcatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttc 8984740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 9020815 - 9020900
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||| ||  ||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  9020815 atataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatca 9020900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 9030366 - 9030451
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||  ||| ||| ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  9030366 atataaaagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatca 9030451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 9008018 - 9008074
Alignment:
Q  472 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 9008074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 2841125 - 2841071
Alignment:
Q  474 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 2841071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 8988423 - 8988508
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||  ||| ||| |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  8988423 atataaaagcataagcgagttcatctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatca 8988508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 9016461 - 9016546
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||  ||| ||| ||||||| ||||||||||||  ||| |||||||||||||||||| |||||||||||||| |||||    
T  9016461 atataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatca 9016546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 477 - 528
Target Start/End: Complemental strand, 19232504 - 19232453
Alignment:
Q  477 atacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatca 19232453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 522
Target Start/End: Original strand, 8992116 - 8992195
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 522  Q
    |||||||||||  ||| ||| | ||||| ||||||| |||||||| | |||||||||||||||||||||||||| |||||    
T  8992116 atataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttc 8992195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 8979048 - 8979088
Alignment:
Q  205 atctttaattcctcaactttagttttacttatgcattaatg 245  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  8979048 atctttaattcttcaactttagttttacctatgcattaatg 8979088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 513
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  478 tacctttctcggccttttggctaagatcaagtgtag 513  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 528
Target Start/End: Complemental strand, 10763978 - 10763932
Alignment:
Q  482 tttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||| |||||| ||||||||||||||||||| ||||| |||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatca 10763932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 8975663 - 8975724
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagat 504  Q
    |||||||||||  ||| |||||| |||||||||||||  |||||  ||||||||||||||||    
T  8975663 atataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 8995547 - 8995596
Alignment:
Q  203 taatctttaattcctcaactttagttttacttatgcattaatgaccacta 252  Q
    ||||||| ||||| |||||||||||||||  |||||||||||| ||||||    
T  8995547 taatcttcaattcttcaactttagttttatctatgcattaatggccacta 8995596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 41841291 - 41841206
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||| ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41841291 atataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 41841206  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 44878951 - 44879036
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||  || || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44878951 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 44879036  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 44880970 - 44880885
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||  || || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44880970 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 44880885  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 399 - 528
Target Start/End: Complemental strand, 10944581 - 10944453
Alignment:
Q  399 agtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggc 498  Q
    |||||||||||||| | |||||||| |||| ||||| |||||  |||||||||||  ||  ||  ||| ||  ||||||||||||||||| |||||||||    
T  10944581 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcgaccttttggc 10944483  T
Q  499 taagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||||| |||||    
T  10944482 taagatcaagtgtagtatctgttcttatca 10944453  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 40054312 - 40054365
Alignment:
Q  475 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 40054365  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 37679757 - 37679808
Alignment:
Q  477 atacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 37679808  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  468 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 518  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 37682057 - 37682110
Alignment:
Q  475 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatca 37682110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 42220960 - 42220909
Alignment:
Q  467 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 518  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  42220960 ctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 42555198 - 42555144
Alignment:
Q  467 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 521  Q
    |||||||||||||||||||| |  |||||||||||||||||||| || |||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtt 42555144  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 528
Target Start/End: Original strand, 44582870 - 44582906
Alignment:
Q  492 ttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||| |||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatca 44582906  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 10796029 - 10795944
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10796029 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 10795944  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 10791768 - 10791706
Alignment:
Q  466 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 10791706  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 30521242 - 30521295
Alignment:
Q  475 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatca 30521295  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 8875691 - 8875742
Alignment:
Q  477 atacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatca 8875742  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 50077338 - 50077253
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50077338 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 50077253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 463 - 528
Target Start/End: Complemental strand, 11652511 - 11652446
Alignment:
Q  463 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11652511 ccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 11652446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 49106644 - 49106583
Alignment:
Q  467 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 49106583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 49108772 - 49108687
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||| ||| ||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49108772 atataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 49108687  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 3461258 - 3461196
Alignment:
Q  466 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 3461196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 26984773 - 26984721
Alignment:
Q  476 catacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 26984721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 26998846 - 26998794
Alignment:
Q  476 catacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 26998794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 476 - 522
Target Start/End: Original strand, 48205832 - 48205878
Alignment:
Q  476 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 522  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttc 48205878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 521
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  482 tttctcggccttttggctaagatcaagtgtagtatctgtt 521  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 23267716 - 23267684
Alignment:
Q  343 atatcctctgcttggtaactgctctttgttggc 375  Q
    |||||||||||||||||| ||||||||||||||    
T  23267716 atatcctctgcttggtaattgctctttgttggc 23267684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 480 - 516
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  480 cctttctcggccttttggctaagatcaagtgtagtat 516  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 1716591 - 1716506
Alignment:
Q  443 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||  || ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1716591 atataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 1716506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 468 - 528
Target Start/End: Original strand, 7524961 - 7525021
Alignment:
Q  468 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 7525021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 3643640 - 3643693
Alignment:
Q  475 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatca 3643693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 4103249 - 4103298
Alignment:
Q  479 acctttctcggccttttggctaagatcaagtgtagtatctgttcatatca 528  Q
    ||||||||| || |||||| |||||||||||||||||||||||| |||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatca 4103298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 477 - 522
Target Start/End: Complemental strand, 15758608 - 15758563
Alignment:
Q  477 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 522  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttc 15758563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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