View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_low_14 (Length: 499)
Name: NF21233_low_14
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 6 - 481
Target Start/End: Complemental strand, 42918040 - 42917565
Alignment:
| Q |
6 |
agcagcacagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattg |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42918040 |
agcagcaaagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattg |
42917941 |
T |
|
| Q |
106 |
catcacatgaaaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaag |
205 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917940 |
catcacatgacaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaag |
42917841 |
T |
|
| Q |
206 |
gcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917840 |
gcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctg |
42917741 |
T |
|
| Q |
306 |
gaccccaagctcatcatcgctgaaatcagttaacaatgtagacnnnnnnnggccggttaacctagaaaactaatgaaaatcagagcaaaaaacaatcatg |
405 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
42917740 |
gaccccaagctcatcatcgctgaaaccagttaacaatgtatacaaaaaaaggtcggttaacctagaaaactaatgaaaatcagagaaaaatacaatcatg |
42917641 |
T |
|
| Q |
406 |
aagcagcaatttgataccgcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatat |
481 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917640 |
aagcagcaatttgatacagcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatat |
42917565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 189 - 330
Target Start/End: Original strand, 33965175 - 33965316
Alignment:
| Q |
189 |
aggaagcattacccaaggcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgta |
288 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
33965175 |
aggaagcattacccagggcaacgcaccaatatgatcttcatgaccatgtgttataacaagcgcttcaattttgtggctccattttcttataaacgttgta |
33965274 |
T |
|
| Q |
289 |
tcaggtattatcttctggaccccaagctcatcatcgctgaaa |
330 |
Q |
| |
|
|||||||| ||||| || || || || ||||||| ||||||| |
|
|
| T |
33965275 |
tcaggtataatcttttgtactccgaggtcatcatagctgaaa |
33965316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University