View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_17 (Length: 466)
Name: NF21233_low_17
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 6178503 - 6178548
Alignment:
| Q |
404 |
aaattactattttaatcttaactaaaaatgcacaagggagagccat |
449 |
Q |
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| T |
6178503 |
aaattactattttaatcttaactaaaaatgcacaagggagagccat |
6178548 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 6267010 - 6267072
Alignment:
| Q |
235 |
tctatattt-accaataaacaaaaccaagatagatcttaaatataaaagagtacttaaattta |
296 |
Q |
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| T |
6267010 |
tctatatttcacaaataaacaaaaccaagttagatcttaaatatgaaagagtacttgaattta |
6267072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 448
Target Start/End: Original strand, 6267113 - 6267211
Alignment:
| Q |
350 |
aattacaatttaaaattcttcacnnnnnnnagtaagaatcaaactatagctattaaattactattttaatcttaactaaaaatgcacaagggagagcca |
448 |
Q |
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| T |
6267113 |
aattacaatttaaaattcatcaatttttttagtaggaatcaaagtataactataaaattattattttaatcttaactataaaagcacaagggaaagcca |
6267211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6260216 - 6260257
Alignment:
| Q |
1 |
aatgccccaccatgaataacctcttccatgatattcattatt |
42 |
Q |
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| T |
6260216 |
aatgccccaccatgaaaaacatcttccatgatattcattatt |
6260257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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