View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_low_18 (Length: 461)

Name: NF21233_low_18

Description: NF21233

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21233_low_18

[»] chr5 (2 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 68; E-Value: 3e-30

Query Start/End: Original strand, 256 - 355

Target Start/End: Complemental strand, 7570266 - 7570167

Alignment:

Q	256	taatgtatcaccttaacaatatgaacaatgagaaaggccacccaaacaaacacaagaagtgataattctttccaataaatgttctttagcaaagggacct	355	Q
		\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	7570266	taatatattaccttaacaatctgaacaattagaaaggccacccaaacatatacaaggagtgataattctttccaataaatgttctttagcaaaggcacct	7570167	T

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Target: chr5; HSP #2

Raw Score: 53; E-Value: 3e-21

Query Start/End: Original strand, 132 - 192

Target Start/End: Complemental strand, 7570607 - 7570547

Alignment:

Q	132	tacctgcaataaattaagaatccaatactcaatggagcaagccttggtgtatgtctgcata	192	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7570607	tacctgcaagaaattaagaatccaatactcaatggagcaagtcttggtgtatgtctgcata	7570547	T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 40; E-Value: 0.0000000000002

Query Start/End: Original strand, 265 - 356

Target Start/End: Original strand, 33125103 - 33125194

Alignment:

Q	265	accttaacaatatgaacaatgagaaaggccacccaaacaaacacaagaagtgataattctttccaataaatgttctttagcaaagggacctg	356	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\| \| \|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	33125103	accttaagaatttgaacaatgagaaaagccacccaaacatacataagaactgataactccttccagtgaatgttgtctagtaaagggacctg	33125194	T

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