View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_23 (Length: 411)
Name: NF21233_low_23
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 40843243 - 40843624
Alignment:
| Q |
14 |
gaagaaacatatatgatgtccatactcaatcatagcaatggattttttcaacacaaccaagtgtttagcaaatttaacattattttggctcaaggggaag |
113 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40843243 |
gaagaaacatataggatgtccatactcgatcatagcaatggattctttcaacacaacaaagtgtttaggaaatttaacattattttggctcaaggggaag |
40843342 |
T |
|
| Q |
114 |
ggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatccaatgaaggt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40843343 |
ggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcccatgaaggt |
40843442 |
T |
|
| Q |
214 |
gcactgcatagccggtgtcttgccacccgtcatactgtgaatgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctg |
313 |
Q |
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| T |
40843443 |
gtactgcataaccggtgtcttgccacccgtcataccgtgaatgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctg |
40843542 |
T |
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| Q |
314 |
ccataaagtcacatcattcggaccgtgcttcataacatcgttacataaacaaaaacatcgaatcagcttgtagtcatctgtc |
395 |
Q |
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| T |
40843543 |
ccataaagtcacatcattcggaccgtgcttcataacatcgttacataaacaaaaacatcgaatcagcttgtagtcatctgtc |
40843624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 40847595 - 40847795
Alignment:
| Q |
35 |
atactcaatcatagcaatggattttttcaacacaaccaagtgtttagcaaatttaacattattttggctcaaggggaagggtgttttaacgaagtcatcg |
134 |
Q |
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| T |
40847595 |
atactcgatcgtagcaatggattctttcaacaccaccaagtgtttataaaatttatcataattttggctcaagggg-----tgttttaacgaagtcctcg |
40847689 |
T |
|
| Q |
135 |
tcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatccaatgaaggtgcactgcatagccggtgtctt |
234 |
Q |
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||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||| |||||||||| | ||||| || |||||||| |||||||||| |
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| T |
40847690 |
tcactcaagttaa-tgataccaacacatgtaccccaaaataatcttcgaagccccacgaatgacacattccatgaaagtaaactgcataaccggtgtctt |
40847788 |
T |
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| Q |
235 |
gccaccc |
241 |
Q |
| |
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||||||| |
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| T |
40847789 |
gccaccc |
40847795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 391
Target Start/End: Complemental strand, 46502849 - 46502499
Alignment:
| Q |
35 |
atactcaatcatagcaatggattttttcaacacaaccaagtgtttagcaaatttaacattattttggctcaaggggaagggtgttttaacgaagtcatcg |
134 |
Q |
| |
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|||||| |||||||||||||| | ||||||||| |||| ||||||||||||| || ||| ||| ||| | |||||||||| ||| |||| | || |
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| T |
46502849 |
atactcgatcatagcaatggactctttcaacaccaccatgtgtttagcaaatctaccataattatggtt------gaagggtgttgtaatgaagacctca |
46502756 |
T |
|
| Q |
135 |
tcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatccaatgaaggtgcactgcatagccggtgtctt |
234 |
Q |
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| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| || ||||||| || | || ||| ||||| || || |||| |
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| T |
46502755 |
ttactcaggttaaatgataccaacacctcatccccaaaataatcttcatagccccaccagtggcacatcccttgcaagtacaccgcataaccagtctctt |
46502656 |
T |
|
| Q |
235 |
gccacccgtcatactgtgaatgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctgccataaagtcacatcattcgg |
334 |
Q |
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| T |
46502655 |
gccacatgtcagtccaaagatgacttggcatttctacttgaagatccctccaacagttgcttcttaggtcatatatctgccataagatctcatcatttgg |
46502556 |
T |
|
| Q |
335 |
accgtgcttcataacatcgttacataaacaaaaacatcgaatcagcttgtagtcatc |
391 |
Q |
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| | ||||| || || | |||||||||||||||||||||||||||||||| |
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| T |
46502555 |
atcacgcttctcgggattgtcgaaaaaacaaaaacatcgaatcagcttgtagtcatc |
46502499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 4041563 - 4041627
Alignment:
| Q |
254 |
atgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctgccata |
318 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||| |
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| T |
4041563 |
atgatttggcatttcaacttcaagatccctccaactgttactttttaggctatatatctgccata |
4041627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 4041419 - 4041513
Alignment:
| Q |
110 |
gaagggtgttttaacgaagtcatcgtcactcaagttaaatgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcc |
204 |
Q |
| |
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|||||||||| ||| |||| | || ||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||| ||||||| |
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| T |
4041419 |
gaagggtgttgtaatgaagacctcatcactcaagttaaatgataccaacacctcatccccgtcgtaatcttcatatccccaccaatggcacatcc |
4041513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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