View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_low_25 (Length: 404)
Name: NF21233_low_25
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 47582642 - 47582271
Alignment:
| Q |
13 |
aatatgttcaaagaagatgatgataggtggtgccggaagaagatggtgtcccggcatgggaccatacaacaaaccaatgggtattatgcatggaactgaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582642 |
aatatgttcaaagaagatgatgataggtggtgccggaagaagatggtgtcccggcatgcgaccatacaacaaaccaatgggtattatgcatggaactgaa |
47582543 |
T |
|
| Q |
113 |
gaaagctaaatgtgacaccaaatacctatttcttaggctctgcaagttaacaaacaccaaagaaagacacctcaaccttaaaaatagtaagaaaaattaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582542 |
gaaagctaaatgtgacaccaaatacctatttcttaggctctgcaagttaacaaacaccaaagaaagacacctcaaccttaaaaatagtaagaaaaattat |
47582443 |
T |
|
| Q |
213 |
cagggtacgaaagacaaggttttacacttttatttaaatagaagtctcttgtttatatatgattnnnnnnnntagaaaaggaaaaggagttaaaaccaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
47582442 |
tagggtacgaaagacaaggttttacacttttatttaaatagaagtctcttctttatatatgattaaaaaaaa-atagaaggaaaaggagttaaaaccaat |
47582344 |
T |
|
| Q |
313 |
tcactttataaaacaaccttataatggtttacatgacaaacctatttttgaattttggatatccctaccctgc |
385 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582343 |
tcactttaaaaaacaaccttataatggtttacatgacaaacctatttttgaattttggatatccctaccctgc |
47582271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University