View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_low_27 (Length: 395)
Name: NF21233_low_27
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 8941637 - 8941268
Alignment:
| Q |
18 |
caaatgctccacaatactgttgcacacaattcagcctgaacctgtacattattttccagcaggtgaaatataatttctggcacaatccagcagttcgcca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
8941637 |
caaatgctccacaatactgttgcacacaattcagcctgaacctgtacatcattttccagcaggtgaaatataatttctggcgcaatccagcagttctcca |
8941538 |
T |
|
| Q |
118 |
aacaccaactgctgtacagcagtggnnnnnnnnn--gtggtaactgtcctcatgagggtcgttgcacaaagcacgcgtacgatggacagttaactcatgg |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8941537 |
aacaccaactgctgtacagcagtggaaaaaaaaaaagtggtaactgtcctcatgagggtcgttgcacaaagcacgcttacgatggacagttaactcatgg |
8941438 |
T |
|
| Q |
216 |
cgcaatttctttttagcttaatatgagatttttggtccaagctcaaattgatgcaaattaaatataggttttaaacttccctnnnnnnnnttaaaattaa |
315 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
8941437 |
agcaatttctttttagcataatatgagatttttggtccaagctcaaattgatgcaaattaaatataggttttaaacttccctaaaaataattaaacttaa |
8941338 |
T |
|
| Q |
316 |
gttttttgaaggattttaaacttattgtttcacagttgcggatatttcctcatcgcatttaaaacctatg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941337 |
gttttttgaaggattttaaacttattgtttcacagttgcggatatttcctcatcgcatttaaaacctatg |
8941268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University