View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_29 (Length: 378)
Name: NF21233_low_29
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 31214753 - 31214399
Alignment:
| Q |
8 |
cgaagaaaatctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaa |
107 |
Q |
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| T |
31214753 |
cgaagaaaatctccaattacttccatcgagttgttgttgtttttttggaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaa |
31214654 |
T |
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| Q |
108 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttg |
207 |
Q |
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| T |
31214653 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttg |
31214554 |
T |
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| Q |
208 |
gtttcaatgcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattcgtta |
307 |
Q |
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| T |
31214553 |
gtttcaatgcgtatattaaacttttttcaattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatcttacattgcattcgtta |
31214454 |
T |
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| Q |
308 |
gttcatggcaggacagacaatgccgacacagacatgtggtaggacagatgatatt |
362 |
Q |
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| T |
31214453 |
gttcatggtaggacagacaatgccgacacggacatgtggtaggacagatgatatt |
31214399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 30499073 - 30499388
Alignment:
| Q |
8 |
cgaagaaaatctccaattacttccatcgagttgttgttgnnnnnnncgaaaaagaaattgttatgtaatatgtgaagtgaagaaaagggaatataataaa |
107 |
Q |
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| T |
30499073 |
cgaagaaaatctccaattacttccatagagtagttgttgtttttttcgaaaaagaaattgtaatgtaatatatgaagtgaagaaaagggaatataataaa |
30499172 |
T |
|
| Q |
108 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaacaagtttagttagggggttgatttgtgaatgtgtgtgatatttgatttgatttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
30499173 |
ttgtgatgtaggtgtggcttttgttgaaatgaaatgaaatgtgcaag----ttggttagagggttgaattgtgaatgtgtgtgatatttgatttgattt- |
30499267 |
T |
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| Q |
208 |
gtttcaatgcgtatattaaactttttt-caattcaattggtatggtttggagaattgcatttttgatgatatcatgattcgatc-----ttacattgcat |
301 |
Q |
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| T |
30499268 |
----caatgcgtataataaactttttttcatttcaattggtaaggtttggagaattgcatttttgatgatatcatgatttgatcttacattacattgcat |
30499363 |
T |
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| Q |
302 |
tcgttagttcatggcaggacagaca |
326 |
Q |
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| T |
30499364 |
tcgttagttcatggtaggacagaca |
30499388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 31214870 - 31214909
Alignment:
| Q |
288 |
atcttacattgcattcgttagttcatggcaggacagacaa |
327 |
Q |
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| T |
31214870 |
atcttacattgcattcgttagttcatggtaggacagacaa |
31214909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 48671514 - 48671477
Alignment:
| Q |
8 |
cgaagaaaatctccaattacttccatcgagttgttgtt |
45 |
Q |
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| T |
48671514 |
cgaagaaagtcttcaattacttccatcgagttgttgtt |
48671477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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