View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_31 (Length: 362)
Name: NF21233_low_31
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 174 - 346
Target Start/End: Original strand, 4496992 - 4497163
Alignment:
| Q |
174 |
tgactaataaggctaactaggatttatacagaacacctaacatgtgaatctattacatataatgaattataatcaatgtatgtaagtttatgacattaca |
273 |
Q |
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| T |
4496992 |
tgactaataaggctag-taggatttatacagaacacctcacatgtgaatctattacatatgatgaattataatcaatgtatgcaagtttgtgacattata |
4497090 |
T |
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| Q |
274 |
tcatttctatgtcagctgattgggagctttgtggattgcccagttcatcagaaatgcttacactctccaacct |
346 |
Q |
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| T |
4497091 |
tcatttctatgtcagctgattgggagctttgtggattgcccagttcatcagaaatgcttacactctccaacct |
4497163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 346
Target Start/End: Original strand, 4491385 - 4491484
Alignment:
| Q |
247 |
caatgtatgtaagtttatgacattacatcatttctatgtcagctgattgggagctttgtggattgcccagttcatcagaaatgcttacactctccaacct |
346 |
Q |
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| T |
4491385 |
caatgtatgtgagtttatgacattacatcatttctatatcagctgattgtaagctttgtggattgcccggttcatcagaaatgcttacactctccaacct |
4491484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 4503705 - 4503819
Alignment:
| Q |
212 |
aacatgtgaatctattacatataatgaattataatcaatgtatgtaagtttatgacattacatcatttctatgtcagctgattgggagctttgtggattg |
311 |
Q |
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| T |
4503705 |
aacatgtgaatctattacatatgatgaattataatcaaagtatgtaagtttgtgacattatatcatttctatgacagctgattgggatcgttgtggattg |
4503804 |
T |
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| Q |
312 |
cccagttcatcagaa |
326 |
Q |
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| T |
4503805 |
atcggttcatcagaa |
4503819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 4496303 - 4496416
Alignment:
| Q |
22 |
gaacttgtaatgtgtaaaagaaatttaagtttgaaaattcatggtggccaattccttaaagccatctcattcatatataagcatgcaagtatatagtaca |
121 |
Q |
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| T |
4496303 |
gaacttggaatgtgtataggaaatttaaatttgaaaaataatgttggccaattccttaaagccatctcattcatatataagtttgtaagtatacagtaca |
4496402 |
T |
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| Q |
122 |
ttccatggatgcat |
135 |
Q |
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| T |
4496403 |
ttccagggatgcat |
4496416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 4490721 - 4490801
Alignment:
| Q |
57 |
aattcatggtggccaattccttaaagccatctcattcatatataagcatgcaagtatatagtacattccatggatgcatac |
137 |
Q |
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| T |
4490721 |
aattaatgttggccaattccataaagccatctcattcgtatataagtttgtaaatatataatacgttctatggatgcatac |
4490801 |
T |
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