View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_low_34 (Length: 348)
Name: NF21233_low_34
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 2528209 - 2527899
Alignment:
| Q |
17 |
aggaaaaactatgatcctaaagaaaatacggagaaatcgcattttccttcttttgcttataagatgatggaacaagggaaggtggaagatttaattgatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
2528209 |
aggaaaaactatgatcctaaagaaaattcggagaaatcgcattttccttcttttgcttataagatgatggaacaagggaagatggaagatttaattgact |
2528110 |
T |
|
| Q |
117 |
ctgaggtgaaaatatgtgaaaatgatgtgagagttgagattgctttgaatgttgcatttttgtgtatacaagaagatatgtgtttgaggccttctatgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2528109 |
ctgaggtgaaaatatgtgaaaatgatgtgagagttgagattgctttgaatgttgcatttttgtgtatacaagaagatatgtgtttgaggccttctatgaa |
2528010 |
T |
|
| Q |
217 |
taaagttgtacaaatgcttgagggtctatgtgatgttcctaaggtaccaaatgggtctccattaggttctaaattttatttaaatttgcttagaccaaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2528009 |
taaagttgtacaaatgcttgagggtctatgtgatgttcctaaggtaccaaatgggtctccattaggttctaaattttatttaaatttgcttagaccaaca |
2527910 |
T |
|
| Q |
317 |
agtgagagtgg |
327 |
Q |
| |
|
||||||||||| |
|
|
| T |
2527909 |
agtgagagtgg |
2527899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 44695165 - 44695106
Alignment:
| Q |
178 |
gtgtatacaagaagatatgtgtttgaggccttctatgaataaagttgtacaaatgcttga |
237 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||| |||| ||||||||| ||||||||||| |
|
|
| T |
44695165 |
gtgtatacaagatgatatgaatttgagaccttccatgagtaaagttgttcaaatgcttga |
44695106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 31029119 - 31029223
Alignment:
| Q |
26 |
tatgatcctaaagaaaatacggagaaatcgcattttccttcttttgcttataagatgatggaacaagggaaggtggaagatttaattgattctgaggtga |
125 |
Q |
| |
|
||||||||||| || | | | ||||||||| |||| ||| |||||||| ||||||||||||| |||| || ||| |||| | |||||||| ||| ||| |
|
|
| T |
31029119 |
tatgatcctaatgagacttcagagaaatcgaatttccctcgttttgcttttaagatgatggaagaaggtaaagtgagagatatcattgattcggagatga |
31029218 |
T |
|
| Q |
126 |
aaata |
130 |
Q |
| |
|
||||| |
|
|
| T |
31029219 |
aaata |
31029223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 49464251 - 49464327
Alignment:
| Q |
167 |
gttgcatttttgtgtatacaagaagatatgtgtttgaggccttctatgaataaagttgtacaaatgcttgagggtct |
243 |
Q |
| |
|
|||||||| | ||||||||||||||| |||| | |||| ||||| |||| |||||||| |||||| | |||||||| |
|
|
| T |
49464251 |
gttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtct |
49464327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University