View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_35 (Length: 330)
Name: NF21233_low_35
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 40928920 - 40929226
Alignment:
| Q |
19 |
tgattcactccttcacactctctgaaaagactcagacacagtcaccgcttgtcccgttactcagttctttgataatgttccttctacttgtggactaata |
118 |
Q |
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| T |
40928920 |
tgattcactccttcacactctctgaaaagactcagacacagtcaccgcttgtcccgttactcagttctttgataatgttccttctacttgtggactaata |
40929019 |
T |
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| Q |
119 |
tatatattcgcatttcattttctttcaattaaaaaatgagcatagcactcacgtattgcattacatcaccacttctctttttcattc-------actttc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40929020 |
tatatattcgcatttcattttctttcaattaaaaaatgagcatagcactcacgtattgcattacatcaccacttctctttttcattcactttcaactttc |
40929119 |
T |
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| Q |
212 |
actctagccatcctttctctttaacttttccgtttacaataaggacactctattcttctt-ggttacttataccaattttactactctactacctaccat |
310 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40929120 |
actctagccaacct-----tttaacttttccgtttacaataaggacactctattcttcttgggttacttataccaattttactactctactacctaccat |
40929214 |
T |
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| Q |
311 |
ccccttcatctc |
322 |
Q |
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|||||||||||| |
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| T |
40929215 |
ccccttcatctc |
40929226 |
T |
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