View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_36 (Length: 321)
Name: NF21233_low_36
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 47317699 - 47317404
Alignment:
| Q |
20 |
gaaaagtgtcacttgagaacgacccgaatgagcaatcataatcccttcaacgggtctgtaatcgtcaagaaatgaattgattgtggtctcccaataaaca |
119 |
Q |
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| T |
47317699 |
gaaaagtgtcacttgagaacgacccgaatgagcaatcataatcccttcaacgggtctgtaatcgtcaaggaatgaattgattgtggtctcccaataaaca |
47317600 |
T |
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| Q |
120 |
gcatcgcctccgttgttctgaatacgagtcaaatgggaatcttccaagtgaataagaagtcctgttttctgactaaagtgtccaagcaaaacatgtctta |
219 |
Q |
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| T |
47317599 |
gcatcgcctccgttgttctgaatacgagtcaaatgggaatcttccaagtgaataagaagtcctgttttctgactaaagtgtccaagcaaaacatgtctta |
47317500 |
T |
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| Q |
220 |
tgatctctgatgagccttcacttctggcttttaatgtggatggatcagaacatattttgagaatgaaacagtcctctccatttatcttcttctcac |
315 |
Q |
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| T |
47317499 |
tgatctctgatgagccttcacttctggcttttaatgtggatggatcagaacatattttgagaatgaaacagtcctctccatttatcttcttctcac |
47317404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 313
Target Start/End: Original strand, 5406385 - 5406674
Alignment:
| Q |
24 |
agtgtcacttgagaacgacccgaatgagcaatcataatcccttcaacgggtctgtaatcgtcaagaaatgaattgattgtggtctcccaataaacagcat |
123 |
Q |
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| T |
5406385 |
agtgtcactacagatcgacctgagtgagcaatcataatcccttcaacaggtctgtagtcgtcaagaaatgaatttatcgtggtctcccaataaactgcat |
5406484 |
T |
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| Q |
124 |
cgcctccgttgttctgaatacgagtcaaatgggaatcttccaagtgaataagaagtcctgttttctgactaaagtgtccaagcaaaacatgtcttatgat |
223 |
Q |
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| T |
5406485 |
cgcctccattgttctgaatacgggtcaaatgggaatcttccaagtgaacaagaagtcctgttttctgactaaagtatccgaacaaaacgtgccttatgat |
5406584 |
T |
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| Q |
224 |
ctctgatgagccttcacttctggcttttaatgtggatggatcagaacatattttgagaatgaaacagtcctctccatttatcttcttctc |
313 |
Q |
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| T |
5406585 |
ctctgctggaccttcgctcctggcttttaatgtcgatggatctgcacaaagcttgaggatgaaacaatcctcttcatttatcttcttctc |
5406674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 48371634 - 48371787
Alignment:
| Q |
45 |
gaatgagcaatcataatcccttcaacgggtctgtaatcgtcaagaaatgaattgattgtggtctcccaataaacagcatcgcctccgttgttctgaatac |
144 |
Q |
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| T |
48371634 |
gaatgggcaatcatgatcccttccacaggcctgtaatcatcaaggaatgaattgatcgttgtttcccaataaaccgcgtcacctccattggattgtatgc |
48371733 |
T |
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| Q |
145 |
gagtcaaatgggaatcttccaagtgaataagaagtcctgttttctgactaaagt |
198 |
Q |
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| T |
48371734 |
gggtcagatgagaatcctcaatgtgaacaagaagcccagttttctgactaaagt |
48371787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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