View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_39 (Length: 309)
Name: NF21233_low_39
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 28994481 - 28994270
Alignment:
| Q |
1 |
atgtctactaagctcaatatatgataataacattttcctcttcctaccaaattaatcattaacatttatctataaaaatcgtttttgtttgttctacatg |
100 |
Q |
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| T |
28994481 |
atgtctacaaagctcaatatatgataataacattttcctctttctaacaaattaatcattaacatttatctataaaaatcgtttttgtttgttctacatg |
28994382 |
T |
|
| Q |
101 |
taccaaagattttgcaactaaattatgtatgttggaaaattatttatannnnnnngggtgatccattctacatatagttaatagtgagaaattaaattct |
200 |
Q |
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| T |
28994381 |
taccaaagattttgcaactaaattatgtatgttggaaaattatttatatttttttgggtgatccattctacatatagttaatagtgagaaattaaattct |
28994282 |
T |
|
| Q |
201 |
cttacttgtctg |
212 |
Q |
| |
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|||||||||||| |
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| T |
28994281 |
cttacttgtctg |
28994270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 28994221 - 28994189
Alignment:
| Q |
261 |
gtctacaaggctactaacaagacctattgatgg |
293 |
Q |
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| T |
28994221 |
gtctacaaggctactaacaagacctattgatgg |
28994189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 28956364 - 28956332
Alignment:
| Q |
179 |
taatagtgagaaattaaattctcttacttgtct |
211 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
28956364 |
taatattgagaaattaaattctcttacttgtct |
28956332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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