View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_low_4 (Length: 825)
Name: NF21233_low_4
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 13 - 788
Target Start/End: Complemental strand, 23100471 - 23099696
Alignment:
| Q |
13 |
aatatatcgatgaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttaca |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23100471 |
aatatatcgatgaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttaca |
23100372 |
T |
|
| Q |
113 |
atgagacgtgtaatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcagg |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23100371 |
atgagaagtgtaatgcataactttaaacctaaaccatgaaaggcaaatgatgaaacatttccaaaactcagtggagtgtgacagacaaacaaccatcagg |
23100272 |
T |
|
| Q |
213 |
caaatatgtgttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaatctaattcacaaagacaaaattg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23100271 |
caaatatgtgttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaaactaattcacaaagacaaaattg |
23100172 |
T |
|
| Q |
313 |
gtttaccttgtgttgattatgtcttagctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggca |
412 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23100171 |
gtttaccttgtgttgattatgtcttacctactttgacatgagctagaacaatatctcaggctccaccccaccattgatttccaacatccatatattggca |
23100072 |
T |
|
| Q |
413 |
tactaatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23100071 |
tactaatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagt |
23099972 |
T |
|
| Q |
513 |
taaaagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaaca |
612 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23099971 |
taaaagttgttcaggaagaaatagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaaca |
23099872 |
T |
|
| Q |
613 |
atgaatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataatacc |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
23099871 |
atgaatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataatacc |
23099772 |
T |
|
| Q |
713 |
aacacttgcttgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcactaagctgaaccaaactgaatg |
788 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23099771 |
aacacttgcttgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcactaagctgaacgaaactgaatg |
23099696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 703; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 13 - 790
Target Start/End: Complemental strand, 6719111 - 6718333
Alignment:
| Q |
13 |
aatatatcgatgaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaat-gttatcctagacgcgaaaattagtttttacttgttttac |
111 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6719111 |
aatatatcaatgaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaattgttatcctagacgcgaaaattagtttttacttgttttac |
6719012 |
T |
|
| Q |
112 |
aatgagacgtgtaatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6719011 |
aatgagacgtgtaatgcataactttaaacctaaaccatgaaagacaaatgatgaaacatttccaaaactcagaggagtgtgacagacaatcaaccatcag |
6718912 |
T |
|
| Q |
212 |
gcaaatatgtgttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaatctaattcacaaagacaaaatt |
311 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6718911 |
gcaaatatgtgttaaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaaactaattcacaaagacaaaatt |
6718812 |
T |
|
| Q |
312 |
ggtttaccttgtgttgattatgtcttagctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggc |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6718811 |
ggtttaccttgtgttgattatgtcttacctactttgacatgagcaagaacaatatctcaggctccaccccaccattgatttccaacatccatatattggc |
6718712 |
T |
|
| Q |
412 |
atactaatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaag |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6718711 |
atactaatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaag |
6718612 |
T |
|
| Q |
512 |
ttaaaagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaac |
611 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6718611 |
ttaaaagttgttcaggaagaaacaaagtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaac |
6718512 |
T |
|
| Q |
612 |
aatgaatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataatac |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6718511 |
aatgaatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataatac |
6718412 |
T |
|
| Q |
712 |
caacacttgcttgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcactaagctgaaccaaactgaatgat |
790 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6718411 |
caacacttgcttgaatctaggggtgtgaaaaatgtggttaactgaaaccatatcactaagctgaaccaaactgaatgat |
6718333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 18331539 - 18331682
Alignment:
| Q |
124 |
aatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaaatatgtgt |
223 |
Q |
| |
|
||||||||| ||||| |||||| |||| |||| |||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
18331539 |
aatgcataattttaagcctaaaccatggaagataaatgatgaaacatttccaaaactcagttgagtgtggcagagaatcaaccatcaggcaaatatgttt |
18331638 |
T |
|
| Q |
224 |
tgaatgttcaatgaagcattataacaaacaggtggtgaagggaa |
267 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
18331639 |
tgaaagtttaatgaagcattataacaaacaggtgggggagggaa |
18331682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 116 - 790
Target Start/End: Complemental strand, 34339296 - 34338622
Alignment:
| Q |
116 |
agacgtgtaatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaa |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34339296 |
agacgtgtaatgcttaactttaaacctaaaccatgaaagacaaatgatgaaacattttcaaaactcagtggagtgtgacagacaatcaaccatcaggcaa |
34339197 |
T |
|
| Q |
216 |
atatgtgttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaatctaattcacaaagacaaaattggtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34339196 |
atatgtgttgaatgttcaatgaagcattataacaaacaggtggtgaagggaacacaatcaatagtaagaaaaaaactaattcacaaagacaaaattggtt |
34339097 |
T |
|
| Q |
316 |
taccttgtgttgattatgtcttagctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggcatac |
415 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34339096 |
tatcttgtgttgattatgtcttacctactttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatccatatattggcatac |
34338997 |
T |
|
| Q |
416 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34338996 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacttttcataatctaagggataatccaagttaa |
34338897 |
T |
|
| Q |
516 |
aagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaacaatg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34338896 |
aagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacgtctaacaaacaacaaagaacaatg |
34338797 |
T |
|
| Q |
616 |
aatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataataccaac |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
34338796 |
aatcttcaaaattgtggcagataacttgtaatcaactaagaatattttatcacttctttagattttaaccttgctaagaatataaaaaaataataccaac |
34338697 |
T |
|
| Q |
716 |
acttgcttgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcactaagctgaaccaaactgaatgat |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34338696 |
acttgcttgaatccaggggtgtgaaaaatgtggttaactgaaaccatatcactaagctgaaccaaactgaatgat |
34338622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 8e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 26121705 - 26121521
Alignment:
| Q |
13 |
aatatatcgatgaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttaca |
112 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26121705 |
aatatttcgatgaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgtgaaaattagtttttacttgttttaca |
26121606 |
T |
|
| Q |
113 |
atgagacgtgtaatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacaga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26121605 |
atgagacgtgtaatgcataactttaaacctaaaccatgaaagacaaatgatgaaacatttccaaaactcagtggagtgtgacaga |
26121521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 26127167 - 26126983
Alignment:
| Q |
13 |
aatatatcgatgaagaacaaagtttaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgcgaaaattagtttttacttgttttaca |
112 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26127167 |
aatatttcgatgaagaacaaagttgaaccctcaaatgctctccaaaattatacattgaatgttatcctagacgtgaaaattagtttttacttgttttaca |
26127068 |
T |
|
| Q |
113 |
atgagacgtgtaatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacaga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26127067 |
atgagacgtgtaatgcataactttaaacctaaaccatgaaagacaaatgatgaaacatttccaaaactcagtggagtgtgacaga |
26126983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 416 - 634
Target Start/End: Original strand, 5194963 - 5195172
Alignment:
| Q |
416 |
taatgcaatcataaaatatcctattgtgacatctagaagctgaccattgcaaatccaatccaagttaacctttcataatctaagggataatccaagttaa |
515 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| | | |
|
|
| T |
5194963 |
taatgcaaacataaaaaatcctattgtgatatctagaagctgaccattgaaaatccaatccaagttaaccttccataatctaaggagtaag----gacta |
5195058 |
T |
|
| Q |
516 |
aagttgttcaggaagaaacagggtaaagagaaagaaaagaaaccatcaaattaaattcaacttagtatttgacaagtctaacaaacaacaaagaacaatg |
615 |
Q |
| |
|
||| |||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5195059 |
aagctgttcaggaaaagataggg-----agaaagaaaagaaaccatcaaattaaattcaacttagtatttgacacatctaacaaacaacaaagaacaatg |
5195153 |
T |
|
| Q |
616 |
aatcttcaaaattgtggca |
634 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
5195154 |
catcttcacaattgtggca |
5195172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 124 - 258
Target Start/End: Original strand, 38945467 - 38945601
Alignment:
| Q |
124 |
aatgcataactttaaacctaaatcatgaaagacaaatgatgaaacatttccaaaactcaatggagtgtgacagacaatcaaccatcaggcaaatatgtgt |
223 |
Q |
| |
|
||||||||||||||| |||||| |||| |||| ||||||| |||||||||||||||| | | ||||||| || | ||||||||||||||||||||||| | |
|
|
| T |
38945467 |
aatgcataactttaagcctaaaccatggaagataaatgataaaacatttccaaaacttagttgagtgtggcacagaatcaaccatcaggcaaatatgttt |
38945566 |
T |
|
| Q |
224 |
tgaatgttcaatgaagcattataacaaacaggtgg |
258 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |
|
|
| T |
38945567 |
tgaaagttcaatgaagcattacaacaaacaggtgg |
38945601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 635 - 729
Target Start/End: Original strand, 5195212 - 5195303
Alignment:
| Q |
635 |
gataacttgtaatcaactaagaatattttatcacttctttagatttaaaccttgctaagaatatcaaaaaataataccaacacttgcttgaatcc |
729 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
5195212 |
gataacttgtcatcaactaagaatattttatcactactttagattttaaccttgctaagaatatacaaaaataat---gacacttgcttgaatcc |
5195303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 320336 - 320392
Alignment:
| Q |
345 |
ttgacatgagccagaacaatctctctggctccaccccaccattgatttccaacatcc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
320336 |
ttgacatgagccagaacaatctctctggctcaattccaccattgatttccaatatcc |
320392 |
T |
|
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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 9461548 - 9461479
Alignment:
| Q |
186 |
gagtgtgacagacaatcaaccatcaggcaaatatgtgttgaatgttcaatgaagcattataacaaacagg |
255 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9461548 |
gagtgtggcagagaatcaaccatcaggcaaagatgtgttgaaagttcaatgaagcattataacaaacagg |
9461479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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