View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_40 (Length: 307)
Name: NF21233_low_40
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 27896736 - 27896839
Alignment:
| Q |
11 |
catcatcataatgtaaacaacaatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaactataac |
110 |
Q |
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| T |
27896736 |
catcatcataatgtaaacaacaatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaactataac |
27896835 |
T |
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| Q |
111 |
tcat |
114 |
Q |
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|||| |
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| T |
27896836 |
tcat |
27896839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 27897729 - 27897793
Alignment:
| Q |
243 |
actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttatt |
307 |
Q |
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| T |
27897729 |
actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttatt |
27897793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 27897447 - 27897502
Alignment:
| Q |
192 |
ggacattacatgtgaatattgtttttatatgttttaatcaatttttgattcactat |
247 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
27897447 |
ggacattacatgtgaatattgtttttatatgtctgaatcaatttttgattcactat |
27897502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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