View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_42 (Length: 291)
Name: NF21233_low_42
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 54488076 - 54487813
Alignment:
| Q |
1 |
agaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttctcacaa |
100 |
Q |
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||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54488076 |
agaaaaagggtaattagggaaatgaaattgccatgacaatgacaaaattaattctcaaaatcacgttaccgcaaaagctccgaattgtggcttctcacaa |
54487977 |
T |
|
| Q |
101 |
acgtgagtttgggaccacattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgc |
200 |
Q |
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||||||||||| ||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
54487976 |
acgtgagtttgagactatattcacgttttataaaatcgcttctgaagctgcccaaacatcaaaaagtatgttgaaaccacgtttcaaaaagcaaactcgc |
54487877 |
T |
|
| Q |
201 |
gtttgaggcttctaaatgtggaaccaaacaagcacgaaatcgattttacaaactcaatgttacc |
264 |
Q |
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| T |
54487876 |
gtttgaggcttccaaacgtggaaccaaacaagcacgaaatcgattttacaaactcaatgttacc |
54487813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 38305483 - 38305251
Alignment:
| Q |
3 |
aaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttctcacaaac |
102 |
Q |
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||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38305483 |
aaaaagggtaattaggaaaatgaaattgtcatgacaatgacaaaattaattatcaaaatcaagttgccgcaaaagctccgaattgtggcttctcacaaac |
38305384 |
T |
|
| Q |
103 |
gtgagtttgggaccacattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcgt |
202 |
Q |
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| T |
38305383 |
gtgagtttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatgaaaaagtatgctgaaaccacgtttcaaaaagcaaactcgtgt |
38305284 |
T |
|
| Q |
203 |
ttgaggcttctaaatgtggaaccaaacaagcac |
235 |
Q |
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| T |
38305283 |
ttgaggcttccaaacgcggaaccaaacaagcac |
38305251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 31246896 - 31247130
Alignment:
| Q |
1 |
agaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttctcacaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31246896 |
agaaaaagggtaattagggaaatgaaactgtcatgacaatgacaaaattgattctcaaaatcacgttgccgcaaaagcttcgaattgtggcttctcacaa |
31246995 |
T |
|
| Q |
101 |
acgtgagtttgggaccacattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgc |
200 |
Q |
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|||||| |||||||| | |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31246996 |
acgtgaatttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatcaaaaagtatgctaaaatcacgtttcaaaaagcaaactcgc |
31247095 |
T |
|
| Q |
201 |
gtttgaggcttctaaatgtggaaccaaacaagcac |
235 |
Q |
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|||||||||||| ||| | |||||||||||||||| |
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| T |
31247096 |
gtttgaggcttccaaacgcggaaccaaacaagcac |
31247130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42600023 - 42599789
Alignment:
| Q |
1 |
agaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttctcacaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42600023 |
agaaaaagggtaattagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttaccgcaaaagctccgaattgtggcttctcacaa |
42599924 |
T |
|
| Q |
101 |
acgtgagtttgggaccacattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgc |
200 |
Q |
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||||||||||||||| | |||||||||||||| ||| ||||||||||||| |||||||||||||| || | | ||| ||||||||||||||||||||||| |
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| T |
42599923 |
acgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgaccaaacatcaaaaaataagttgaaaccacgtttcaaaaagcaaactcgc |
42599824 |
T |
|
| Q |
201 |
gtttgaggcttctaaatgtggaaccaaacaagcac |
235 |
Q |
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|||||||||||| ||| | |||||||||||||||| |
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| T |
42599823 |
gtttgaggcttccaaacgcggaaccaaacaagcac |
42599789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 42752800 - 42753033
Alignment:
| Q |
2 |
gaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttctcacaaa |
101 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42752800 |
gaaaaagggtaattggggaaatgaaactgccatgacaatgacaaaattaattctcaaaatcacgttgtcgcaaaagctccgaattgtggcttctcacaaa |
42752899 |
T |
|
| Q |
102 |
cgtgagtttgggaccacattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaaactcgcg |
201 |
Q |
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|||||||||||||| | |||||||||||||| ||| ||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
42752900 |
cgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatcaaaaagtatgttgaaaccacgtttcaaaaagcaaactcgcg |
42752999 |
T |
|
| Q |
202 |
tttgaggcttctaaatgtggaaccaaacaagcac |
235 |
Q |
| |
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||||||||||| ||| | |||||||||||||||| |
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| T |
42753000 |
tttgaggcttccaaacgcggaaccaaacaagcac |
42753033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 41461 - 41293
Alignment:
| Q |
66 |
ttgccgcaaaagctccgaattgtggcttctcacaaacgtgagtttgggaccacattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaa |
165 |
Q |
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||||||||||||||||||||||||||||| || ||||| ||||| ||||| | |||||| |||||| ||| ||||||||| | ||||||||| ||||| |
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| T |
41461 |
ttgccgcaaaagctccgaattgtggcttcacagaaacgcgagttcgggactatattcacattttatggaatcacttctgaagttatccaaacat-aaaaa |
41363 |
T |
|
| Q |
166 |
gtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
235 |
Q |
| |
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|||| | ||| ||| ||||||||||| |||||||||| |||||| | ||| | |||||||||| ||||| |
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| T |
41362 |
gtattgtgaaaccacctttcaaaaagctaactcgcgttggaggctacgaaacgcggaaccaaacgagcac |
41293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 4569671 - 4569836
Alignment:
| Q |
70 |
cgcaaaagctccgaattgtggcttctcacaaacgtgagtttgggaccacattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtat |
169 |
Q |
| |
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||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||||| || ||| ||| ||||| | ||||||| |||||||||| |
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| T |
4569671 |
cgcaaaagctcataattgtcgcttctcataaacgtgggtttgggactgtattcacgtttgatggaatcacttatgaagttacccaaacagcaaaaagtat |
4569770 |
T |
|
| Q |
170 |
gctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
235 |
Q |
| |
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| | ||| ||||||| ||||||||||| ||||||||||||| | ||| |||| ||||||||||||| |
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| T |
4569771 |
gatgaaaccacgtttgaaaaagcaaacgcgcgtttgaggctgccaaacgtggtaccaaacaagcac |
4569836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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