View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_44 (Length: 277)
Name: NF21233_low_44
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_44 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 17579695 - 17579446
Alignment:
| Q |
20 |
ggattctcatatgctataaaacttgagagtacagttactggttatctccttcactgtagaggatggagatcaacctatctctatccaaaaagaccatgtt |
119 |
Q |
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| T |
17579695 |
ggattctcatatgctataaaacttgagagtacagttactggttatctccttcactgtagaggatggagatcaacctatctctatccaaaaagaccatgtt |
17579596 |
T |
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| Q |
120 |
tcttaggatgtgccccaactgacatgaaagagggatcacttcagttggtaaagtggacatctgaactttgcttgcttggaatctctaaatatagcccatt |
219 |
Q |
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| T |
17579595 |
tcttaggatgtgccccaactgacatgaaagagggataccttcagttggtaaagtggacatctgaactttgcttgcttggaatctctaagtatagcccatt |
17579496 |
T |
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| Q |
220 |
cacttatgggatttcaagattgcccattattcactgtctaaccctttgct |
269 |
Q |
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| T |
17579495 |
cacttatgggatttcaagattgcccattattcattgtctaaccttttgct |
17579446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 273229 - 273390
Alignment:
| Q |
77 |
agaggatggagatcaacctatctctatccaaaaagaccatgtttcttaggatgtgccccaactgacatgaaagagggatcacttcagttggtaaagtgga |
176 |
Q |
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| T |
273229 |
agaggatggaaatcagcttacctttacccaaaaacaccatgtttcttagggtgtgcaccaactgatatcaaagaaggcatgcttcaattggtgaagtggt |
273328 |
T |
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| Q |
177 |
catctgaactttgcttgcttggaatctctaaatatagcccattcacttatgggatttcaaga |
238 |
Q |
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| T |
273329 |
tgtctgaactttgcttgtttgctgtctctaaatacagcccttttacttatggattttcaaga |
273390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 16382135 - 16381888
Alignment:
| Q |
20 |
ggattctcatatgctataaaacttgagagtacagttactggttatctccttcactgtagaggatggagatcaacctatctctatccaaaaagaccatgtt |
119 |
Q |
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|||||||| |||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||| |
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| T |
16382135 |
ggattctcgtatgctataaaacttgagagcaccattactggctatctccttcactgcagaggatggagatcaacctatctttacccaaaaataccatgtt |
16382036 |
T |
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| Q |
120 |
tcttaggatgtgccccaactgacatgaaagagggatcacttcagttggtaaagtggacatctgaactttgcttgcttggaatctctaaatatagcccatt |
219 |
Q |
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| T |
16382035 |
tcttaggatgtgctccaactaacatgaaagagggaatgagtcaattgataaagtgggtatctgaacttttgttgtttgcaatatctaaatatagtccatt |
16381936 |
T |
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| Q |
220 |
cacttatgggatttcaagattgcccattattcactgtctaaccctttg |
267 |
Q |
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| T |
16381935 |
cacttatgggatttcaagattgcctattgttcattgtttaaccttttg |
16381888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 17154 - 17395
Alignment:
| Q |
20 |
ggattctcatatgctataaaacttgagagtacagttactggttatctccttcactgtagaggatggagatcaacctatctctatccaaaaagaccatgtt |
119 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| |||||||| || || ||||||||||||||||| ||||| || |||||||| ||||||| |
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| T |
17154 |
ggattctcgtatgctataaaacttgagagtactgttactggctatctcctccattgcagaggatggagatcaacttatctttacccaaaaaggccatgtt |
17253 |
T |
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| Q |
120 |
tcttaggatgtgccccaactgacatgaaagagggatcacttcagttggtaaagtggacatctgaactttgcttgcttggaatctctaaatatagcccatt |
219 |
Q |
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| T |
17254 |
tcttaggatgtgctccaactgatatgaaagagggattaattcaacccataaaatggtcatctgaacttttgttacttgcaatctctaaatatagtccatt |
17353 |
T |
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| Q |
220 |
cacttatgggatttcaagattgcccattattcactgtctaac |
261 |
Q |
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||||||||| ||||||||||||| | |||||| ||| |||| |
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| T |
17354 |
cacttatggcctttcaagattgcctactattcattgtttaac |
17395 |
T |
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