View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_45 (Length: 276)
Name: NF21233_low_45
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_45 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 38629638 - 38629903
Alignment:
| Q |
11 |
ttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatt |
110 |
Q |
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| T |
38629638 |
ttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatt |
38629737 |
T |
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| Q |
111 |
tcaatatttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatgcagtagaactagtccgattgcaagaac |
210 |
Q |
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| T |
38629738 |
tcaatatttactgcctatagatttggttcttatttggtgactaattattcggcagacctcttcaaattgtatgcagtagaactagtctgattgcaagaac |
38629837 |
T |
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| Q |
211 |
atttttacaggaaatacttgtatgaactatgaacccgaacattatgagaacaagccatttatagtt |
276 |
Q |
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| T |
38629838 |
atttttacaggaaatacttgtatgaactatgaacccgaacattatgagaacaagccatttatagtt |
38629903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 38696616 - 38696449
Alignment:
| Q |
14 |
tactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaa---tagtgaattact---cttcgaattatatatgttggattggatc |
107 |
Q |
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| T |
38696616 |
tactctttatcaattcaagtgtatatgtgaaatcaagtgtaataaaacgtgaaaaggtagtgaattactactctttgaattatgtctgttggat-----c |
38696522 |
T |
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| Q |
108 |
atttcaatatttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatg |
183 |
Q |
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| T |
38696521 |
ctttcaaaatttactccttacagatttggttgtt---tgatgacttattatccagttgacctcttcaaattgtatg |
38696449 |
T |
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