View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_47 (Length: 269)
Name: NF21233_low_47
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 29822884 - 29822653
Alignment:
| Q |
11 |
agaatatcacattccaattcctatacctctgttcaacccaccgaaattgagattctactaaaaagataaatgctagagtcacactctctaaaattctctt |
110 |
Q |
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| T |
29822884 |
agaatatcacattccaattcctatacctctgttcaacccaccgaaactgagattctactaaaaagataaatgttagagtcacactctttaaaattctctt |
29822785 |
T |
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| Q |
111 |
tttaacacactccaatagaaataagcaatgtaatccacttttttatttcctttaccggttacctgtttcactttgtttcaaattaaatccaactgaaaac |
210 |
Q |
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| T |
29822784 |
tt-aacacactccaatcaaaataagccatgtaatccacttttttatttcctttaccggttacctgtttcactttgtttcaaattaaatccaactgaaaac |
29822686 |
T |
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| Q |
211 |
ggccaccagagcttgcgaataagacattgaagg |
243 |
Q |
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| T |
29822685 |
ggccaccagagcttgcgaataagacattgaagg |
29822653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 7887670 - 7887622
Alignment:
| Q |
110 |
ttttaacacactccaatagaaataagcaatgtaatccacttttttattt |
158 |
Q |
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| T |
7887670 |
ttttaacacactccaatcaaaataagccatgtagtccacttttttattt |
7887622 |
T |
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