View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_49 (Length: 262)
Name: NF21233_low_49
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 47292543 - 47292374
Alignment:
| Q |
1 |
cctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatgagcttagcccaaccgcaatttaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
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| T |
47292543 |
cctcctattgcagggacataagcaacaataagttttcctgattttctgaaattcatgatttcctttcgaatttcatgagtttagcccaaccacaatttaa |
47292444 |
T |
|
| Q |
101 |
acgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatt |
170 |
Q |
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| T |
47292443 |
acgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatt |
47292374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 54303457 - 54303202
Alignment:
| Q |
2 |
ctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatg-agcttagcccaaccgcaatttaa |
100 |
Q |
| |
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|||| ||| |||| |||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||| || ||| ||||||| || || |
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| T |
54303457 |
ctccaatttcagggacataagcaaagataagttttcctgattttctgaaatttaagatttgccttcgaatttcatctagtttaccccaaccagtgttcaa |
54303358 |
T |
|
| Q |
101 |
acgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatttgaagaacactgccgtttttaacacactct |
200 |
Q |
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| T |
54303357 |
attttggatattgagatatacaacataaatacgaggatcatacatggctttcaacaaattatcgcaaatttgaagaacactgccgtttttaacacactca |
54303258 |
T |
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| Q |
201 |
gaggggagtgctagtagagtcttaagtttaaccagatacttcttcaatcaagcctg |
256 |
Q |
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| T |
54303257 |
gaggggagtgctagtagagtcttaagtttaaccagatgcttcttcaatcaagcctg |
54303202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 56209657 - 56209829
Alignment:
| Q |
2 |
ctcctattgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcat-gagcttagcccaaccgcaatttaa |
100 |
Q |
| |
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|||| |||| || ||||||||| |||| |||||| || |||||||||||||| | ||||| |||||||||||||| ||| ||||||||||| |||||||| |
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| T |
56209657 |
ctccaattgaagtaacataagccacaacaagtttaccagattttctgaaatttaagatttgccttcgaatttcatcgagtttagcccaaccacaatttaa |
56209756 |
T |
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| Q |
101 |
acgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatttga |
173 |
Q |
| |
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| T |
56209757 |
agtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatattatcgcaaaattga |
56209829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 45863436 - 45863572
Alignment:
| Q |
37 |
cctgattttctgaaattcatgatttcccttcgaatttcatgagctt-agcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
135 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||| ||||||||| || ||| |||||| | || |||||||||||| |
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| T |
45863436 |
cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag |
45863535 |
T |
|
| Q |
136 |
gatcatatgcggctttcaacaaattatcgcaaatttg |
172 |
Q |
| |
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| T |
45863536 |
gatcataagctgctttcaacaaattatctcaaatttg |
45863572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 45883384 - 45883520
Alignment:
| Q |
37 |
cctgattttctgaaattcatgatttcccttcgaatttcat-gagcttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgat |
135 |
Q |
| |
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||||||||||||||||| | ||| | ||||||||||||| ||| ||||||||||||||||||||| | ||| |||||| |||| ||||||||||| |
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| T |
45883384 |
cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag |
45883483 |
T |
|
| Q |
136 |
gatcatatgcggctttcaacaaattatcgcaaatttg |
172 |
Q |
| |
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||||||| || |||||||||||||||||||||||||| |
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| T |
45883484 |
gatcataagctgctttcaacaaattatcgcaaatttg |
45883520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 7973580 - 7973738
Alignment:
| Q |
16 |
acataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcat-gagcttagcccaaccgcaatttaaacgataaatatgaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||| ||||| |||| ||| |||||| |||||||| || |
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| T |
7973580 |
acataagcaacaataagtttacctgattttctgaaatttatgatttccctttgaatttcatcgagtttagctcaactgcattttaaaggataaataacaa |
7973679 |
T |
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| Q |
115 |
gacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatttga |
173 |
Q |
| |
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| |||| |||||||||||| ||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
7973680 |
catacacagcagaaatacgaggatcataagcggctttcaacaaattctcgcaaatttga |
7973738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 10520393 - 10520226
Alignment:
| Q |
7 |
attgcaggaacataagcaacaataagttttcctgattttctgaaattcatgatttcccttcgaatttcatga-gcttagcccaaccgcaatttaaacgat |
105 |
Q |
| |
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|||| ||| |||||||| |||| | ||| || |||||||||||||| | |||| |||| |||| |||| | | ||||||||||| ||| ||||| | | |
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| T |
10520393 |
attgaagggacataagccacaaccattttccccgattttctgaaatttaaaatttgcctttgaatctcatcaagtttagcccaaccccaacttaaatggt |
10520294 |
T |
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| Q |
106 |
aaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatttga |
173 |
Q |
| |
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||||||||| | || || ||||||| | |||||||||| |||||||| |||||| ||||||||||| |
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|
| T |
10520293 |
cgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttga |
10520226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 35803584 - 35803629
Alignment:
| Q |
126 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattt |
171 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| ||||||||||| |
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| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaattt |
35803629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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