View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_low_50 (Length: 256)
Name: NF21233_low_50
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 42549406 - 42549180
Alignment:
| Q |
17 |
cctcaatcccttcccacttcatagtcttcacccaagcctctacttgaacaacaccgaccctcaaatcgcgctgaccttgatacaacaacaccctcatctc |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42549406 |
cctcaatccattcccacttcatagtcttcacccaagcctctacttgaacaacaccgaccctcaaatcgcgctgaccttgatacaacaacaccctcatctt |
42549307 |
T |
|
| Q |
117 |
ctccttcaataacttctctaccatatactttacacttttcattaaatcagcatgcaatgcagcccaaacaattttactacatttctcataaacaaatgat |
216 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42549306 |
ctccttcaacaacttccctaccatatactttacacttttcattaaatcagcatgcaatgcagcccaaacaattttactacatttctcataaacaaatgat |
42549207 |
T |
|
| Q |
217 |
tcatcaacattcacccctaaggccttc |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42549206 |
tcatcaacattcacccctaaggccttc |
42549180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 33016818 - 33016595
Alignment:
| Q |
20 |
caatcccttcccacttcatagtcttcacccaagcctctacttgaacaacaccgaccctcaaatcgcgctgaccttgatacaacaacaccctcatctcctc |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | || |||||| || || | ||||||||||||| ||||||| || | |||||| | ||| |
|
|
| T |
33016818 |
caatcccttcccatttcatagtcttcacccaaacatccgtttgaaccacgccatcttgcaaatcgcgctgagcttgatataatagcaccctagtactctc |
33016719 |
T |
|
| Q |
120 |
cttcaataacttctctaccatatactttacacttttcattaaatcagcatgcaatgcagcccaaacaattttactacatttctcataaacaaatgattca |
219 |
Q |
| |
|
|||| |||||||| |||||| |||| ||||||||||||| ||||||||||||| || ||| |||||| | ||| || ||| ||||||||||||||| |
|
|
| T |
33016718 |
actcaacaacttctccaccataaacttaacacttttcattacatcagcatgcaatacatccccaacaatgtcactgcaaacctcgtaaacaaatgattca |
33016619 |
T |
|
| Q |
220 |
tcaacattcacccctaaggccttc |
243 |
Q |
| |
|
| ||||| ||||| || |||||| |
|
|
| T |
33016618 |
ttcacatttacccccaaagccttc |
33016595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University