View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_51 (Length: 255)
Name: NF21233_low_51
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40165807 - 40166042
Alignment:
| Q |
1 |
aaggcaacgttgatgagcaattttcctcctccttttccggaaaaaatgtgttctaagtttcctcaccattttgtcaaatagtgaattaaaacgcaagaat |
100 |
Q |
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| T |
40165807 |
aaggcaacgttgatgagcaattttcctcctccttttccggaaaaaatgtgttccaagtttcctcaccattttgtcaaatagtgaattaaaacgcaagaat |
40165906 |
T |
|
| Q |
101 |
atcagaaaagttgcaatattatacggtgtgnnnnnnnnnnnnnnnnnncaaagagttgtctttaactttagatctattgtgttcttgtaagttacacatc |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40165907 |
atcagaaaagttgcaatattatacggtgtgaaaaataaattaaaaaaacaaagagttgtctttaactttagatctattgtgttcttgtaagttacacatc |
40166006 |
T |
|
| Q |
201 |
ccgatcgaccatctgctgctgtatcaaggtgagtgt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40166007 |
ccgatcgaccatctgctgctgtatcaaggtgagtgt |
40166042 |
T |
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