View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_54 (Length: 250)
Name: NF21233_low_54
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36999379 - 36999618
Alignment:
| Q |
1 |
aaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggccttggtcttctccataccagatttggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999379 |
aaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggccttggtcttctccataccagatttggca |
36999478 |
T |
|
| Q |
101 |
gaagcaccaatgttggcagctgtttccttaatggtctctccagctttcttagctccctgcatttttaattttaagatttcaacttcttcaacaatcnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
36999479 |
gaagcaccaatgttggcagctgtttccttaatggtctctccagctttcttagctccctgcatttttaattttaagatttcaacttctttaacgatcaaaa |
36999578 |
T |
|
| Q |
201 |
nnnttcaattcc-ttttttatgagattgcttcgttttctt |
239 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||| |
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| T |
36999579 |
aaattcaattcctttttttttgagattgcttcgttttctt |
36999618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 36989119 - 36989236
Alignment:
| Q |
40 |
aaattaaaggaat-accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctc |
138 |
Q |
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|||| |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
36989119 |
aaatgaaaggaattaccttctcctgaagagtggccttggtcttttccatgccagatttggctgaagcaccaatgttggcagctgtctccttaatggactc |
36989218 |
T |
|
| Q |
139 |
tccagctttcttagctcc |
156 |
Q |
| |
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||| | |||||| ||||| |
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| T |
36989219 |
tcctgttttctttgctcc |
36989236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 36994860 - 36994977
Alignment:
| Q |
40 |
aaattaaaggaat-accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctc |
138 |
Q |
| |
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|||| |||||||| ||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
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| T |
36994860 |
aaatgaaaggaattaccttctcttgaaatgtggccttggttttttccatgccagatttggctgaagcaccaatgttggcagctgtctccttaatggactc |
36994959 |
T |
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| Q |
139 |
tccagctttcttagctcc |
156 |
Q |
| |
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||| | |||||| ||||| |
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| T |
36994960 |
tcctgttttctttgctcc |
36994977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 22953883 - 22953995
Alignment:
| Q |
53 |
accttctcttgaagggtggccttggtcttctccataccagatttggcagaagcaccaatgttggcagctgtttccttaatggtctctccagctttcttag |
152 |
Q |
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||||| ||||| | |||||| ||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| | |||||| | | |
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| T |
22953883 |
accttttcttggacggtggctttggtcttctccaagccagacttggcagatgcaccaatgttggctgctgtttccttaatggtctcaactgctttccttg |
22953982 |
T |
|
| Q |
153 |
ctccctgcatttt |
165 |
Q |
| |
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|| |||||||||| |
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|
| T |
22953983 |
ctgcctgcatttt |
22953995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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