View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_55 (Length: 249)
Name: NF21233_low_55
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4775118 - 4775047
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtatacatcatactcaacgctatcttaattcatatt |
72 |
Q |
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| T |
4775118 |
ccttgagagatcaaaaacaggttcactatcactaaggtatgcctcatactcaaagctatatcaattcatatt |
4775047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4727560 - 4727612
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtatacatcatactcaa |
53 |
Q |
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| T |
4727560 |
ccttgagagatcaaaaacaggttcattatcactgaggtatacctcatactcaa |
4727612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4738142 - 4738194
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtatacatcatactcaa |
53 |
Q |
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| T |
4738142 |
ccttgagagatcaaaaacaggttcactatctctgaggtatacctcatactcaa |
4738194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 4682566 - 4682631
Alignment:
| Q |
2 |
cttgagagatcaaaaacaggttcactatcattgaggtatacatcatactcaacgctatcttaattca |
68 |
Q |
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| T |
4682566 |
cttgagagatcaaaaacaggttcattatcactgaggtat-cctcatactcaaagctatattaattca |
4682631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4690342 - 4690413
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtatacatcatactcaacgctatcttaattcatatt |
72 |
Q |
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| T |
4690342 |
ccttgagagatcaaaaacaggttcactatcactgaggtacgcctcctactcaaagttatatcaattcatatt |
4690413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4888824 - 4888757
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtatacatcatactcaacgctatcttaattca |
68 |
Q |
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| T |
4888824 |
ccttgagagatcaaaaacaggttcactactactgaggtatgcctcatactcaaagcaatattaattca |
4888757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10448740 - 10448779
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtat |
40 |
Q |
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| T |
10448740 |
ccttgagagatcaaaaacaggttcactatcgttgaggtat |
10448779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4716984 - 4717033
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtatacatcatact |
50 |
Q |
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|||||| ||||||||| |||||||||||||| |||||||| | ||||||| |
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| T |
4716984 |
ccttgatagatcaaaatcaggttcactatcactgaggtatgcctcatact |
4717033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4921817 - 4921765
Alignment:
| Q |
1 |
ccttgagagatcaaaaacaggttcactatcattgaggtatacatcatactcaa |
53 |
Q |
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||||| ||||||||||||| ||||||||||| |||||||| | | |||||||| |
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| T |
4921817 |
ccttgcgagatcaaaaacaagttcactatcactgaggtatgccttatactcaa |
4921765 |
T |
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