View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_58 (Length: 241)
Name: NF21233_low_58
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 36942282 - 36942069
Alignment:
| Q |
9 |
gaaaagaagagaacatgaagatggtgaatttgaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagca |
108 |
Q |
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| T |
36942282 |
gaaaagaagagaacaggaagatggtgaatttcaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagca |
36942183 |
T |
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| Q |
109 |
aatgcagctaataatttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgcta |
208 |
Q |
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| T |
36942182 |
aatgcagctaataatttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggctttctaaaagacacaaaatcttatgttgcta |
36942083 |
T |
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| Q |
209 |
ttaagagtgtgtca |
222 |
Q |
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| T |
36942082 |
ttaagagtgtgtca |
36942069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 36938852 - 36939049
Alignment:
| Q |
25 |
gaagatggtgaatttgaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaatgcagctaataatt |
124 |
Q |
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||||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||| | ||||||||||||||||||||||||| | ||||||||| ||| |
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| T |
36938852 |
gaagatggtgaatttgaagagtacatgggagaggattttggaaggggggcaggacctaggaagtatacatatgcagaattagcacacgcagctaatgatt |
36938951 |
T |
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| Q |
125 |
tcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgctattaagagtgtgtca |
222 |
Q |
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| T |
36938952 |
tcaaagacgagtataagctaggacaaggaggatttggaggtgtttatagaggttttcttaaagacacaaaatcttatgttgctgttaagagggtgtca |
36939049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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