View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_60 (Length: 240)
Name: NF21233_low_60
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 44613896 - 44614109
Alignment:
| Q |
20 |
attaccaccatgattttatcaaattcatcgttcatccaaacatacactcaaataataattgtatacagtattcttctttacgattgaaaacaatatcttg |
119 |
Q |
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| T |
44613896 |
attaccaccatgattttatcaaattcatcgttcatccaaacatacactcaaataataattgtatacagtattcttctttacgattgaaaacaatatcttg |
44613995 |
T |
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| Q |
120 |
aaaagttctataactcttagtggtctgatttgaggaccactgttttctttgttgttgaaaggaatgactgcaaaattacattaccattgttgtctgtgtt |
219 |
Q |
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| T |
44613996 |
aaaagttctataactcttggtggtctgatttgaggaccactgttttctttattgttgaaaggaacgactgcaaaattacattaccattgttctctgtgtt |
44614095 |
T |
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| Q |
220 |
tttcctttgcttct |
233 |
Q |
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||||||||| |||| |
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| T |
44614096 |
tttcctttgattct |
44614109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 2227643 - 2227707
Alignment:
| Q |
20 |
attaccaccatgattttatcaaattcatcgttcatccaaacatacactcaaataataattgtataca |
86 |
Q |
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| T |
2227643 |
attaccaccataattttatcaaactcatcgttcatccaaacatacactcaaata--aattgtataca |
2227707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 17058161 - 17058190
Alignment:
| Q |
160 |
tgttttctttgttgttgaaaggaatgactg |
189 |
Q |
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| T |
17058161 |
tgttttctttgttgttgaaaggaatgactg |
17058190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 24751456 - 24751420
Alignment:
| Q |
26 |
accatgattttatcaaattcatcgttcatccaaacat |
62 |
Q |
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| T |
24751456 |
accatgattttatcaaattcatcgtcaatccaaacat |
24751420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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