View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_low_63 (Length: 236)

Name: NF21233_low_63
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21233_low_63
NF21233_low_63
[»] chr5 (3 HSPs)
chr5 (11-146)||(34258680-34258809)
chr5 (180-221)||(34258600-34258641)
chr5 (162-217)||(29999983-30000038)
[»] chr1 (5 HSPs)
chr1 (157-221)||(11643719-11643783)
chr1 (162-221)||(14500004-14500063)
chr1 (162-217)||(9141403-9141458)
chr1 (162-201)||(21973253-21973292)
chr1 (162-216)||(51623964-51624018)
[»] chr3 (5 HSPs)
chr3 (162-221)||(11354743-11354802)
chr3 (161-221)||(26495891-26495951)
chr3 (161-212)||(51972051-51972102)
chr3 (160-192)||(26149414-26149446)
chr3 (110-146)||(48922414-48922450)
[»] chr4 (9 HSPs)
chr4 (157-221)||(30783867-30783931)
chr4 (162-221)||(29236013-29236072)
chr4 (162-221)||(24154377-24154437)
chr4 (162-221)||(7205336-7205395)
chr4 (166-217)||(7325955-7326006)
chr4 (162-221)||(22129583-22129642)
chr4 (157-221)||(45789235-45789298)
chr4 (160-202)||(33095137-33095179)
chr4 (157-221)||(15016202-15016267)
[»] chr2 (1 HSPs)
chr2 (162-214)||(9458983-9459035)
[»] chr8 (7 HSPs)
chr8 (163-208)||(43724609-43724654)
chr8 (173-221)||(41429451-41429499)
chr8 (162-217)||(12655639-12655694)
chr8 (163-214)||(23719344-23719395)
chr8 (162-221)||(38513440-38513499)
chr8 (184-221)||(3441879-3441916)
chr8 (161-221)||(9615871-9615931)
[»] chr7 (4 HSPs)
chr7 (159-221)||(45870412-45870474)
chr7 (162-221)||(4909641-4909701)
chr7 (162-221)||(13751838-13751897)
chr7 (162-221)||(38438442-38438501)
[»] chr6 (1 HSPs)
chr6 (162-216)||(34637719-34637773)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 34258809 - 34258680
Alignment:
Q  11 gtattcttttgattgtagggtatcctcatccttgattgatttgtgaaaggcagtttctactttcccctgacgaacacttgtctagtcacaaatttaaaat 110  Q
    |||||||||||||||||||||||    |||||||||||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  34258809 gtattcttttgattgtagggtat----atccttgattgatttgtgaaag-cagtttctactttcccc-gatcaacacttgtctagtcacaaatttaaaat 34258716  T
Q  111 aattactaccgtcgtcccttattatagggccctttt 146  Q
    ||||||||||  |||||||||||||||| |||||||    
T  34258715 aattactacctccgtcccttattataggaccctttt 34258680  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 34258641 - 34258600
Alignment:
Q  180 ttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  34258641 ttgtattaattttgttgacaattattattgttttacatgttt 34258600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 30000038 - 29999983
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacat 217  Q
    ||||||||||||| ||||||| |||||||||||| ||||||  || ||||||||||    
T  30000038 aattaagaaaattaattgttgaattaattttgtttacaatttatattgttttacat 29999983  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 11643719 - 11643783
Alignment:
Q  157 acgaaaattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  11643719 acgagaattaagaaagttgattgttgaattaattttgttgacaattgttattgttttacatgttt 11643783  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 14500063 - 14500004
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||| | |||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  14500063 aattaagatagttgattgttgaattaattttgttgacaattattattgttttacatgttt 14500004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 9141458 - 9141403
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacat 217  Q
    |||||| |||||||||| ||| ||||||||||||| ||||||||| ||||||||||    
T  9141458 aattaaaaaaattgattcttgaattaattttgttgccaattgttattgttttacat 9141403  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 21973292 - 21973253
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaat 201  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  21973292 aattaagaatattgattgttgaattaattttgttgacaat 21973253  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 51624018 - 51623964
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttaca 216  Q
    ||||| |||| ||||||||| |||||||||||||||||||  ||| |||||||||    
T  51624018 aattatgaaagttgattgttttattaattttgttgacaatcattattgttttaca 51623964  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 11354802 - 11354743
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  11354802 aattaagaaagttgattgttgaattaattttgttgacaattgttattgttttacatgttt 11354743  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 26495891 - 26495951
Alignment:
Q  161 aaattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||||  || |||||| |||||||||||||||||||| || ||||||||||||||    
T  26495891 aaattaagaaatgtggttgttgaattaattttgttgacaattgctattgttttacatgttt 26495951  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 51972051 - 51972102
Alignment:
Q  161 aaattaagaaaattgattgttgtattaattttgttgacaattgttactgttt 212  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||| |||||    
T  51972051 aaattaagaaagttgattgttgaattaattttgttgaaaattgttattgttt 51972102  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 26149446 - 26149414
Alignment:
Q  160 aaaattaagaaaattgattgttgtattaatttt 192  Q
    ||||||||||||||||||||||||||| |||||    
T  26149446 aaaattaagaaaattgattgttgtattgatttt 26149414  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 48922450 - 48922414
Alignment:
Q  110 taattactaccgtcgtcccttattatagggccctttt 146  Q
    |||||||||||  ||||||||||||||||||||||||    
T  48922450 taattactacctccgtcccttattatagggccctttt 48922414  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 30783931 - 30783867
Alignment:
Q  157 acgaaaattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    ||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||| ||||||    
T  30783931 acgaaaattaagaaagttgattattgaattaattttgttgacaattgttattgttttatatgttt 30783867  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 29236072 - 29236013
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||||||||| ||||    
T  29236072 aattaagaaaattaattgttgtattaattttgttgacaattgctattgttttacaagttt 29236013  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 24154437 - 24154377
Alignment:
Q  162 aattaagaaaattgatt-gttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||| |||||| |||| |||||||||| |||||||||||| ||||||||||||||    
T  24154437 aattaagaaagttgatttgttgaattaattttgctgacaattgttattgttttacatgttt 24154377  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 7205395 - 7205336
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    ||||||||||| | |||||||||||||||||||||||||||  || ||||||||| ||||    
T  7205395 aattaagaaaactaattgttgtattaattttgttgacaatttctattgttttacaagttt 7205336  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 7325955 - 7326006
Alignment:
Q  166 aagaaaattgattgttgtattaattttgttgacaattgttactgttttacat 217  Q
    |||||| ||| |||||| ||||||||||||||||||||||| ||||||||||    
T  7325955 aagaaagttggttgttgaattaattttgttgacaattgttattgttttacat 7326006  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 22129583 - 22129642
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||| |||||||||| |||| |||||||||||||| ||||  ||||||||||||    
T  22129583 aattaagaaagttgattgttgaattagttttgttgacaattattaccattttacatgttt 22129642  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 45789235 - 45789298
Alignment:
Q  157 acgaaaattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    ||||||||||||||| ||||||||||  ||||||| |  ||||||||||| ||||||||||||||    
T  45789235 acgaaaattaagaaagttgattgttgagttaatttag-cgacaattgttattgttttacatgttt 45789298  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 33095137 - 33095179
Alignment:
Q  160 aaaattaagaaaattgattgttgtattaattttgttgacaatt 202  Q
    |||||||||||| || |||||||||||||||||||||| ||||    
T  33095137 aaaattaagaaagttaattgttgtattaattttgttgagaatt 33095179  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 15016202 - 15016267
Alignment:
Q  157 acgaaaattaagaaaa-ttgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||| |||||| |||| |||||||||  |||||||||||||| ||||||||  |||||||||||||    
T  15016202 acgagaattaaaaaaagttgattgttaaattaattttgttgaaaattgttatcgttttacatgttt 15016267  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 9458983 - 9459035
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgtttta 214  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  9458983 aattaagaaaattgattgttgtatcaattttgttgacaattgttattgtttta 9459035  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 43724654 - 43724609
Alignment:
Q  163 attaagaaaattgattgttgtattaattttgttgacaattgttact 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  43724654 attaagaaaattgattgttgtattaattttgttgacaattgctact 43724609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 41429499 - 41429451
Alignment:
Q  173 ttgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  41429499 ttgattgttgaactaattttgttgacaattgttattgttttacatgttt 41429451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 12655694 - 12655639
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacat 217  Q
    |||||| ||| ||||||||||  |||||||||||||||||||||| ||||||||||    
T  12655694 aattaaaaaagttgattgttgagttaattttgttgacaattgttattgttttacat 12655639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 23719344 - 23719395
Alignment:
Q  163 attaagaaaattgattgttgtattaattttgttgacaattgttactgtttta 214  Q
    ||||||||| |||||| |||||||||||||||||||||||| || |||||||    
T  23719344 attaagaaagttgattattgtattaattttgttgacaattgctattgtttta 23719395  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 38513440 - 38513499
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||| |||||| | ||||||| ||||||||||||||||| ||||||||| ||||    
T  38513440 aattaagaaagttgattttggtattaaatttgttgacaattgttattgttttacaagttt 38513499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 3441879 - 3441916
Alignment:
Q  184 attaattttgttgacaattgttactgttttacatgttt 221  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3441879 attaattttgttgacaattgttattgttttacatgttt 3441916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 9615871 - 9615931
Alignment:
Q  161 aaattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||| | |||||| |||||    
T  9615871 aaattaaaaaagttgattattgaattaattttgttgacaattgttattattttacttgttt 9615931  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 45870474 - 45870412
Alignment:
Q  159 gaaaattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||| || |||||||||| ||||||||||||| ||||||| | ||||||||||||||    
T  45870474 gaaaattaaggaagttgattgttgaattaattttgttggcaattgtcattgttttacatgttt 45870412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 4909701 - 4909641
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgtt-actgttttacatgttt 221  Q
    |||||||||| || ||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  4909701 aattaagaaagttaattgttgaattaattttgctgacaattgttaattgttttacatgttt 4909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 13751897 - 13751838
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||||||||| || ||||||| ||||||||||||  ||||| ||| ||||||||||||||    
T  13751897 aattaagaaagttaattgttgaattaattttgttagcaattattattgttttacatgttt 13751838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 38438442 - 38438501
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttacatgttt 221  Q
    |||| |||||||||||||||| ||||||||||| |||| || ||| |||| |||||||||    
T  38438442 aattgagaaaattgattgttgaattaattttgtagacagtttttattgttatacatgttt 38438501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 34637773 - 34637719
Alignment:
Q  162 aattaagaaaattgattgttgtattaattttgttgacaattgttactgttttaca 216  Q
    |||||||||| |||||| |||||||||||||| ||| ||||| || |||||||||    
T  34637773 aattaagaaagttgattattgtattaattttgctgataattgctattgttttaca 34637719  T

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