View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_68 (Length: 232)
Name: NF21233_low_68
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 38630112 - 38630324
Alignment:
| Q |
1 |
ctgtgaagaatattgattttggttttcactatcaatgaatagatgccgtagcaaggtatgtgaactagcgccatgcagatatacctatagacaagataca |
100 |
Q |
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| T |
38630112 |
ctgtgaagaatattgattttggttttcactatcaatgaatagatgccgtagcaaggtatgtgaactagcgccatgcagatatacctatagacaagataca |
38630211 |
T |
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| Q |
101 |
ttagtgagaataacaagtattttgtatagaaagaaaaatggagaagacatggcatttgtatgttaatagtatatcttaccataagggagcccatggaata |
200 |
Q |
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| T |
38630212 |
ttagtgagaataacaagtatttggtatagaaagaaaaatggagaagacatggcatttgtatgttaatagtatatcttaccataagggagcccatggaata |
38630311 |
T |
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| Q |
201 |
ttaagctcaagaa |
213 |
Q |
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| T |
38630312 |
ttaagctcaagaa |
38630324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 38695825 - 38695745
Alignment:
| Q |
24 |
tttcactatcaatgaatagatgccgtagcaaggtatgtgaactagcgccatgcagatatacctatagacaagatacattagtga |
107 |
Q |
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| T |
38695825 |
tttcactatcaataaatacatgtcgtagcagggtatgtgaactagcgcaaggcagat---cctatagacacgatgcattggtga |
38695745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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