View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_7 (Length: 694)
Name: NF21233_low_7
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 53 - 606
Target Start/End: Original strand, 34062069 - 34062622
Alignment:
| Q |
53 |
ctcaccagaaatcaaggatatgtgggaatcccctgnnnnnnnnnnctatgtatannnnnnngtttggtttatgagacaaaacattcacaaaagaagctga |
152 |
Q |
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| T |
34062069 |
ctcaccagaaatcaaggatatgtgggaatcccctgttttttttttctatgtatatttttttgtttggtttatgagacaaaacattcacaaaagaagctga |
34062168 |
T |
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| Q |
153 |
atgtatgtgttatggcattggatatgtgagctttgttggtttgaaaaaagagagagtgtggggcggcacgaaaagaagagaaagaaaatgatagaatact |
252 |
Q |
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| T |
34062169 |
atgtatgtgttatggcattggatatgtgagctttgttggtttgaaaaaagagagagtgtggggcggcacgaaaagaagagaaagaaaatgatagaatact |
34062268 |
T |
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| Q |
253 |
atctatcatgatgacattattctaaatttttgcnnnnnnnnncattgttgctgtctggaaagaaaaccttttactctgtcatgctttcatgttgtgagat |
352 |
Q |
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| T |
34062269 |
atctatcatgatgacattattctaaatttttcctttttttttcattgttgctgtctggaaagaaaaccttttactctgtcatgctttcatgttgtgagat |
34062368 |
T |
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| Q |
353 |
ctatgttgtgttgtgtgggacatgtcatggtaattttggtttagagtttcattaatgttcaatttaattcatgatgactatggtgttcacgagtcacctt |
452 |
Q |
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| T |
34062369 |
ctatgttgtgttgtgtgggacatgtcatggtaattttggtttagagtttcattaatgttcaatttaattcatgatgactatggtgttcacgggtcacctt |
34062468 |
T |
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| Q |
453 |
ggttgttttgtttcatggtaattttggtttaggagaattctagagttcatatttttcattgttttgaccaattgagattgggaattacaatttcatggct |
552 |
Q |
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| T |
34062469 |
ggttgttttgtttcatggtaattttggtttaggagaattctagagttcatatttttcattgttttgaccaattgagattgggaattacaatttcatggtt |
34062568 |
T |
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| Q |
553 |
aataaaatgttaccaatgatttaataatttagatatgcatgtatcaatatagtt |
606 |
Q |
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| T |
34062569 |
aataaaatgttaccaatgatttaataatttagatatgcatgtatcaatatagtt |
34062622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 598 - 657
Target Start/End: Original strand, 34062646 - 34062705
Alignment:
| Q |
598 |
aatatagttcaatgttattttcttctaaattttgttcgagtcacataaatagtgcagaag |
657 |
Q |
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| T |
34062646 |
aatatagttcaatgttattttcttctaaattttgttcgagtcacataaatagtgcagaag |
34062705 |
T |
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