View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21233_low_72 (Length: 223)
Name: NF21233_low_72
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 7179098 - 7179289
Alignment:
| Q |
18 |
acttagttgggaagagtctaccataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttg |
117 |
Q |
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| T |
7179098 |
acttagttgggaagagtctaccataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttg |
7179197 |
T |
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| Q |
118 |
ccttagttttttgtgaaaagatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatacaacattagttcctttg |
209 |
Q |
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| T |
7179198 |
ccttagttttttgtgaaaagatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatacaacattagttcctttg |
7179289 |
T |
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Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 7192267 - 7192458
Alignment:
| Q |
18 |
acttagttgggaagagtctaccataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||| | | ||| |
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| T |
7192267 |
acttagttgggaagagtctaccataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgatcatgatgattattatttcccttttgttg |
7192366 |
T |
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| Q |
118 |
ccttagttttttgtgaaaagatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatacaacattagttcctttg |
209 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
7192367 |
gcttaattttttgtggaaagatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatataacattagctcctttg |
7192458 |
T |
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