View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21233_low_74 (Length: 215)
Name: NF21233_low_74
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21233_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 22814837 - 22814668
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
22814837 |
atgttggattctcatcttcaacagggttacttgtagcttctcattatattcttgggtggagttttaaggttaatggccaagctcaaaaccttgaaatatc |
22814738 |
T |
|
| Q |
129 |
tgaacttcctgagctaacaatatttgatgagnnnnnnnngtcaaaatttttaactgttgggttgcctttg |
198 |
Q |
| |
|
|||||||||| |||||||| |||||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
22814737 |
tgaacttcctaagctaacagtatttgctgaggtaaaaaagtctaaatttttaactgttgggttgcctttg |
22814668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 22885435 - 22885310
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
22885435 |
atgttggattctcatcttcaacagggttaattgtagcttctcattatattcttggttggagttttaaggttaatagccaagctcaaaaccttgaaatctc |
22885336 |
T |
|
| Q |
129 |
tgaacttcctgagctaacaatatttg |
154 |
Q |
| |
|
|||||||||||||| || |||||||| |
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|
| T |
22885335 |
tgaacttcctgagccaagaatatttg |
22885310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 22805128 - 22805019
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22805128 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgtaatctc |
22805029 |
T |
|
| Q |
129 |
tgaacttcct |
138 |
Q |
| |
|
| || ||||| |
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|
| T |
22805028 |
tcaatttcct |
22805019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 22858269 - 22858144
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
22858269 |
atgttggattctcatcttcaaccggggtaattgtagcttcccattatattcttggttggagttttaaggttaatggccaagctcaaaaccttgaaatctc |
22858170 |
T |
|
| Q |
129 |
tgaacttcctgagctaacaatatttg |
154 |
Q |
| |
|
| ||||||||||||||| |||||||| |
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|
| T |
22858169 |
taaacttcctgagctaagaatatttg |
22858144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 22889102 - 22888993
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| | | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22889102 |
atgttggattctcatcttcaacagggttaatggtagcttctcagtatattcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
22889003 |
T |
|
| Q |
129 |
tgaacttcct |
138 |
Q |
| |
|
|||||||||| |
|
|
| T |
22889002 |
tgaacttcct |
22888993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 22875732 - 22875623
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
22875732 |
atgttggattctcatcttcaacaggtttaattttagcttctcattatattcttggttggagttttaaggttaatggtcaagctcaaacccttgaaatctc |
22875633 |
T |
|
| Q |
129 |
tgaacttcct |
138 |
Q |
| |
|
|||||||||| |
|
|
| T |
22875632 |
tgaacttcct |
22875623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 22880401 - 22880233
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
|||||||||| |||||||||||| ||||| || ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22880401 |
atgttggattatcatcttcaacaaggttaattttagcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
22880302 |
T |
|
| Q |
129 |
tgaacttcctgagctaacaatatttgatgagnnnnnnnngtcaaaatttttaactgttgggttgcctttg |
198 |
Q |
| |
|
||| |||| ||||| || | |||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
22880301 |
tgagcttcatgagccaatagtatttgctga-caaaaaaagtcaaaatttttaactgttgggttacctttg |
22880233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 22830841 - 22830731
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
22830841 |
atgttggattctcatcttcaacagggttcattgcagcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctc |
22830742 |
T |
|
| Q |
129 |
tgaacttcctg |
139 |
Q |
| |
|
||| ||||||| |
|
|
| T |
22830741 |
tgaccttcctg |
22830731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 22839862 - 22839752
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
22839862 |
atgttggattctcatcttcaacagggttcattgcagcttctcattatattcatggttggagttttatggttaatggccaatctcaaaaccttgaaatctc |
22839763 |
T |
|
| Q |
129 |
tgaacttcctg |
139 |
Q |
| |
|
||| ||||||| |
|
|
| T |
22839762 |
tgaccttcctg |
22839752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 22809451 - 22809326
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
||||||||||||||||||||||||| | || | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22809451 |
atgttggattctcatcttcaacaggttctattctatcttctcattatgttcttggttggagttttaaggttaatggtcaagctcaaaaccttgatatctc |
22809352 |
T |
|
| Q |
129 |
tgaacttcctgagctaacaatatttg |
154 |
Q |
| |
|
| ||||||||||||||| || ||||| |
|
|
| T |
22809351 |
taaacttcctgagctaagaacatttg |
22809326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 22913484 - 22913375
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
||||||||||||||||||||||||| | | || | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
22913484 |
atgttggattctcatcttcaacaggttcaattctaacttctcattatattcttggttggagttttaaggttaatggtcaagctcaaaatcttgtaatctc |
22913385 |
T |
|
| Q |
129 |
tgaacttcct |
138 |
Q |
| |
|
|||||||||| |
|
|
| T |
22913384 |
tgaacttcct |
22913375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 22893727 - 22893595
Alignment:
| Q |
65 |
cttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgagnnnnn |
164 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || || |||| | |||| |
|
|
| T |
22893727 |
cttctcattatattcttggttggagttttaagattaatggtcaagctcaaaaccttgtaatctctgaacttcctgagttaccagtattagctgagaaaac |
22893628 |
T |
|
| Q |
165 |
nnngtcaaaatttttaactgttgggttgccttt |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
22893627 |
gaaatcaaattttttaactgttgggttgccttt |
22893595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 22898046 - 22897952
Alignment:
| Q |
65 |
cttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgag |
159 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||| ||||| |||| |
|
|
| T |
22898046 |
cttctcattatattcttggttggagttttaaggttaatggtcaagctgaaaaccttgtaatctctgaacttcctaagctaccaagatttggtgag |
22897952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 22826032 - 22825903
Alignment:
| Q |
65 |
cttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctctgaacttcctgagctaacaatatttgatgagnnnnn |
164 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||| ||| |||||||||||| | ||| || ||||| |||| |
|
|
| T |
22826032 |
cttctcattatattcttggttgaagttttaagcttaatggtcaagctcaaaatcttgtaatttctgaacttcctaaactacgaagatttggtgagaaaaa |
22825933 |
T |
|
| Q |
165 |
nnngtcaaaatttttaactgttgggttgcc |
194 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
22825932 |
agagtccaaatttttaactgttgggttgcc |
22825903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 21150904 - 21151028
Alignment:
| Q |
29 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatatttttggttggagttttaaggttaatggtcaagctcaaaaccttgaaatctc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
21150904 |
atgttggattctcatcttcaacagggttacttgcagcttctcattatattcttggttggagttttaaggttaatggcctggctcaaaaccttgaaatctc |
21151003 |
T |
|
| Q |
129 |
tgaacttcctgagctaacaatattt |
153 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
21151004 |
tgaacttcctgaagtaacagtattt |
21151028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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