View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21233_low_8 (Length: 676)

Name: NF21233_low_8
Description: NF21233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21233_low_8
NF21233_low_8
[»] chr2 (12 HSPs)
chr2 (18-661)||(22624956-22625595)
chr2 (36-151)||(22622019-22622135)
chr2 (153-306)||(29280082-29280230)
chr2 (156-303)||(38996448-38996590)
chr2 (156-247)||(38955819-38955910)
chr2 (156-226)||(28125536-28125606)
chr2 (154-227)||(32281484-32281557)
chr2 (343-445)||(10599831-10599939)
chr2 (163-318)||(10601210-10601360)
chr2 (155-225)||(28926074-28926144)
chr2 (155-226)||(28922416-28922486)
chr2 (159-224)||(21922337-21922402)
[»] chr6 (9 HSPs)
chr6 (156-457)||(21762022-21762319)
chr6 (156-245)||(826713-826802)
chr6 (345-455)||(826565-826676)
chr6 (159-297)||(30836415-30836548)
chr6 (154-228)||(31442515-31442589)
chr6 (156-228)||(20915995-20916067)
chr6 (155-225)||(31665629-31665700)
chr6 (156-226)||(7867948-7868018)
chr6 (158-225)||(15296147-15296215)
[»] chr7 (6 HSPs)
chr7 (255-448)||(6253882-6254081)
chr7 (156-228)||(20077340-20077412)
chr7 (156-231)||(4407779-4407852)
chr7 (157-247)||(6253382-6253472)
chr7 (156-223)||(39742297-39742364)
chr7 (163-226)||(30061499-30061562)
[»] chr3 (12 HSPs)
chr3 (154-315)||(52041300-52041456)
chr3 (363-460)||(2555187-2555285)
chr3 (155-301)||(1141743-1141884)
chr3 (155-315)||(42655772-42655927)
chr3 (156-247)||(22424349-22424440)
chr3 (155-245)||(39484789-39484880)
chr3 (172-224)||(11582590-11582642)
chr3 (155-226)||(15291460-15291530)
chr3 (156-228)||(1529165-1529238)
chr3 (155-222)||(15996384-15996450)
chr3 (408-457)||(42655980-42656029)
chr3 (255-306)||(2550080-2550130)
[»] chr4 (9 HSPs)
chr4 (159-306)||(9451245-9451387)
chr4 (156-230)||(24257703-24257777)
chr4 (156-225)||(12094856-12094925)
chr4 (156-220)||(9199512-9199576)
chr4 (154-226)||(6898752-6898824)
chr4 (156-228)||(9199750-9199822)
chr4 (154-228)||(10427646-10427719)
chr4 (156-222)||(27067874-27067940)
chr4 (408-459)||(24257931-24257982)
[»] chr1 (4 HSPs)
chr1 (156-334)||(22964007-22964180)
chr1 (156-227)||(15700721-15700792)
chr1 (167-245)||(3908810-3908888)
chr1 (155-225)||(46555501-46555572)
[»] chr8 (7 HSPs)
chr8 (156-228)||(26083903-26083975)
chr8 (155-228)||(26981034-26981107)
chr8 (153-225)||(42315339-42315412)
chr8 (155-225)||(45244285-45244356)
chr8 (156-228)||(5334273-5334345)
chr8 (156-225)||(23828343-23828413)
chr8 (156-213)||(42932716-42932773)
[»] chr5 (6 HSPs)
chr5 (156-228)||(6697935-6698007)
chr5 (153-225)||(11300764-11300837)
chr5 (155-225)||(26110687-26110758)
chr5 (156-296)||(31981793-31981927)
chr5 (193-228)||(9045160-9045195)
chr5 (156-225)||(37337323-37337393)


Alignment Details
Target: chr2 (Bit Score: 611; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 18 - 661
Target Start/End: Complemental strand, 22625595 - 22624956
Alignment:
Q  18 aactgctacaatcaacattgtatatctttaaggatttatatacgtcactctaaatatttttgggacttgttgaaggtggaagtgttgaaattttatgttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625595 aactgctacaatcaacattgtatatctttaaggatttatatacgtctctctaaatatttttgggacttgttgaaggtggaagtgttgaaattttatgttg 22625496  T
Q  118 aatatcaccataattgtagattaattaaaggtattaatatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattt 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625495 aatatcaccgtaattgtagattaattaaaggtattaatatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattt 22625396  T
Q  218 tccctccatcaccccatcatttaatttttgacatgcatagtgctttcctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgcat 317  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22625395 tccctccatcaccccatcatttaatttttgacat----agtgctttcctactcagcaagttgagttcaatttttaaatttccctcccacgacctttgcat 22625300  T
Q  318 tgtgcctatgcatgtacctcaaacagctgaatgattgcatttaatatacactaacctcatttctatgtttccaacatgattgttattgtttcatgcacat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625299 tgtgcctatgcatgtacctcaaacagctgaatgattgcatttaatatacactaacctcatttctatgtttccaacatgattgttattgtttcatgcacat 22625200  T
Q  418 tttattctactatctttcccatgcccatgtatacatgtgttatggtaacaatttctttcccgtccgaatttcttttttagaagttacattggagccccat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22625199 tttattctactatctttcccatgcccatgtatacatgtgttatggtaacaatttctttcccgtccgaatttcttttttagaagttacattggacccccat 22625100  T
Q  518 tgattgtgcattggtagcatgtgaatcctatcagaatcagtcaacctttaccacatgaaaggaaggttaagagatgccagttaaatgcatcagtttctat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22625099 tgattgtgcattggtagcatgtgaatcctatcagaatcagtcaacctttaccacatgaaaggaaggttaagagatgccagttaaatgcatcagtttctat 22625000  T
Q  618 tggatgcatctcatctgattaggtgtagtccttttacctctgat 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22624999 tggatgcatctcatctgattaggtgtagtccttttacctctgat 22624956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 22622135 - 22622019
Alignment:
Q  36 tgtatatctttaaggatttatatacgtcactctaaatatttttgggacttgttgaaggtggaagtgtt-gaaattttatgttgaatatcaccataattgt 134  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  22622135 tgtatatctttaaggattaatatacgtctctctaaatacttttgggacttgttgaaggtggaagtgttggaaattttatgttcaatatcaccataattgt 22622036  T
Q  135 agattaattaaaggtat 151  Q
    || ||||||||||||||    
T  22622035 aggttaattaaaggtat 22622019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 153 - 306
Target Start/End: Original strand, 29280082 - 29280230
Alignment:
Q  153 aatatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatg 252  Q
    ||||||||||||||||||||||||||| | |||| ||||   ||||||||||||||||||||||||||||| ||||||  | ||| ||||||| |         
T  29280082 aatatctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctcaatcacctaagcatgtaattttcg----- 29280176  T
Q  253 catagtgc-tttcctactcagcaagttgagttcaatttttaaatttccctcccac 306  Q
      |||||| |||| |||||| |||| | |||||||||||||||||||||||||||    
T  29280177 -ttagtgcttttcgtactcatcaagctaagttcaatttttaaatttccctcccac 29280230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 156 - 303
Target Start/End: Complemental strand, 38996590 - 38996448
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgcat 255  Q
    ||||||||||||||| |||||||| |||||| ||  | |||||||||||||||||||||||||||||||||||  | | |||||||||       ||| |    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatcaaacaaacatttaatt------ctgctt 38996497  T
Q  256 agtg-ctttcctactcagcaagttgagttcaatttttaaatttccctcc 303  Q
    ||||  ||||||||||| |||||| ||||||| ||||||||||||||||    
T  38996496 agtgtttttcctactcatcaagttaagttcaaattttaaatttccctcc 38996448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 38955910 - 38955819
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttg 247  Q
    ||||| ||||||||| ||| |||| |||| | ||||   ||||||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  38955910 atcttacttactaaagcttatctgatcaaactattgataaccctaattctaacctaatattttccctccatcacccaagcatttaatttttg 38955819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 28125536 - 28125606
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 226  Q
    ||||||||||||||| ||||||||||||||| ||   |||||||||||| | |||||||||||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccat 28125606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 32281484 - 32281557
Alignment:
Q  154 atatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatc 227  Q
    |||||||||||||||||  |||| ||||||||| ||| |  ||||||||||||||||| |||||||||||||||    
T  32281484 atatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatc 32281557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 10599939 - 10599831
Alignment:
Q  343 gctgaatgattgcatttaatatacactaacctcatttctatgtttccaacatgatt-gttattgttt--catgcacat---tttattctactatctttcc 436  Q
    ||||||||||  ||||||||||||  | |||||||||||||||||||||| ||||| |||| ||||   |||||||||   |||||||| || |||||||    
T  10599939 gctgaatgatgacatttaatataccttgacctcatttctatgtttccaacgtgatttgttagtgttctccatgcacatatatttattcttctctctttcc 10599840  T
Q  437 catgcccat 445  Q
    |||||||||    
T  10599839 catgcccat 10599831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 163 - 318
Target Start/End: Complemental strand, 10601360 - 10601210
Alignment:
Q  163 ttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgcatagtgctt 262  Q
    |||||||| ||||||| ||||||||||||  || ||||||| |||| |||| ||||||| ||||||||  | |||||||||||||       ||||| ||    
T  10601360 ttactaaagcttgtcttgtcaagcaattgtttaacctaattctaacataatcttttccc-ccatcacctaagcatttaatttttg------ttagtgttt 10601268  T
Q  263 tcctactcagcaagttgagttcaattttta--aatttccctcccacgacatttgcatt 318  Q
    |||||||||||||  | |||||||||||||  |||||||| | ||| || ||||||||    
T  10601267 tcctactcagcaatctaagttcaatttttagtaatttcccactcacaacctttgcatt 10601210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 28926074 - 28926144
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaatt-ttaacctaatattttccctcca 225  Q
    |||||||||||||||| ||||||||||||||| ||| |  ||||||||| |||||||||| |||||||||||    
T  28926074 tatctttcttactaaagcttgtctggtcaagctattagtaaccctaattcttaacctaat-ttttccctcca 28926144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 28922486 - 28922416
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 226  Q
    |||||| ||||||||| | ||||||||||||| ||||  ||||||||| |||||||||| |||||| |||||    
T  28922486 tatcttacttactaaagcatgtctggtcaagctattgtttaccctaatcttaacctaat-ttttccatccat 28922416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 21922337 - 21922402
Alignment:
Q  159 tttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctcc 224  Q
    |||||| ||||| |||||||| |||||| ||    ||||||||| |||||||||||||||||||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctcc 21922402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 156 - 457
Target Start/End: Original strand, 21762022 - 21762319
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgcat 255  Q
    |||||||||||||||||||||||| |||||| ||||   ||||||||||||||||| ||||||||||||||||||| || |||||||||| |       |    
T  21762022 atctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgt------t 21762115  T
Q  256 agtgcttt-cctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgcattgtgcctatgcatgtacctcaaacagctgaatgattg 354  Q
    |||||||| |||||||| |||| | ||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||| |   |  ||||||||      
T  21762116 agtgcttttcctactcatcaagctaagttcaatttttaaatttccctcccacaacatttgcattctgccgatgcatgcacctaaggaatgtgaatgatga 21762215  T
Q  355 catttaatatacactaacctcatttctatgtttccaacatgattgttattgtt-tcatgcacattttattctactatctttcccatgcccatgtatacat 453  Q
    |||||||||||| ||| |||||||||||| |||||||| ||| |||||||||| | |||||||| |||||||||| |||||||||||||||| |||||||    
T  21762216 catttaatataccctatcctcatttctatatttccaacgtgactgttattgttctgatgcacatattattctactctctttcccatgcccatatatacat 21762315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 826802 - 826713
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttt 245  Q
    ||||||||||||||||||||||||||||||| ||||   ||| ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  826802 atctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaatttt 826713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 826676 - 826565
Alignment:
Q  345 tgaatgattgcatttaatatacactaacctcatttctatgtttccaacatgattgttattgtt-tcatgcacattttattctactatctttcccatgccc 443  Q
    ||||||||  |||||||||||| ||| |||||||||||| |||||||| ||| |||||||||| | |||||||| |||||||||| ||||||||||||||    
T  826676 tgaatgatgacatttaatataccctatcctcatttctatatttccaacgtgactgttattgttctgatgcacatattattctactctctttcccatgccc 826577  T
Q  444 atgtatacatgt 455  Q
    || |||||||||    
T  826576 atatatacatgt 826565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 159 - 297
Target Start/End: Complemental strand, 30836548 - 30836415
Alignment:
Q  159 tttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgcatagt 258  Q
    |||||||||||| |||||||| |||||||||||   ||||||||||||| ||||||||||||||||||| ||| | |||||||||||   ||||   |||    
T  30836548 tttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccatcccccaagcatttaatttt---catg---agt 30836455  T
Q  259 gcttt-cctactcagcaagttgagttcaatttttaaattt 297  Q
    ||||| ||||||||||||| | ||||||||||||||||||    
T  30836454 gctttccctactcagcaagctaagttcaatttttaaattt 30836415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 31442515 - 31442589
Alignment:
Q  154 atatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    ||||||||||||||||| ||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  31442515 atatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatca 31442589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 20916067 - 20915995
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    ||||||||||||||| |||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatca 20915995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 31665700 - 31665629
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaatt-ttaacctaatattttccctcca 225  Q
    |||||||||||||||| ||||| ||||||||| ||| |  ||||||||| ||||||||||||||||||||||    
T  31665700 tatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 7868018 - 7867948
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 226  Q
    ||||||||||||||| ||| ||||||||||| ||   |||||||||||| | |||||||||||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccat 7867948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  158 ctttcttactaaaacttgtctggtcaagcaattggataccctaatttt-aacctaatattttccctcca 225  Q
    ||||||||||||| ||||| | ||||||| ||  |  ||||||||||| ||||||||||||||||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 255 - 448
Target Start/End: Original strand, 6253882 - 6254081
Alignment:
Q  255 tagtgctttcctactcagcaagttgagttcaattttta--aatttccctcccacgacatttgcattgtg--cctatgcatgtacctcaaacagctgaatg 350  Q
    ||||||||||||||||| |||  | |||||||||||||  |||||||| ||||| || |||||||| ||  || ||||||||| |||||   ||||||||    
T  6253882 tagtgctttcctactcaccaatctaagttcaatttttagtaatttcccacccacaacctttgcattctgaaccaatgcatgtatctcaagaggctgaatg 6253981  T
Q  351 attgcatttaatatacactaacctcatttctatgtttccaacatgattgttattgttt--catgcacattttattctactatctttcccatgcccatgta 448  Q
    ||  |||||||| |||  | ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||| |||||||||||||    
T  6253982 atgacatttaatctaccttgacctcatttctatgtttccaacatgattgttattgttttccatgcacatattattctactctctttaccatgcccatgta 6254081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 20077412 - 20077340
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    ||||||||||||||| ||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatca 20077340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 4407779 - 4407852
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccc 231  Q
    ||||||||||||||| |  |||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  4407779 atctttcttactaaagc--gtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcaccc 4407852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 6253382 - 6253472
Alignment:
Q  157 tctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttg 247  Q
    |||||||||||||| ||||| |  |||||||||||  || ||||||| ||||||||  ||||||||||||||||  | |||||||||||||    
T  6253382 tctttcttactaaagcttgtttaatcaagcaattgtttaacctaattctaacctaaatttttccctccatcacctaaacatttaatttttg 6253472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 39742364 - 39742297
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctc 223  Q
    ||||||||||||||| ||||| || |||||| ||||   |||||||| ||||||||||||||||||||    
T  39742364 atctttcttactaaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctc 39742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 30061499 - 30061562
Alignment:
Q  163 ttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 226  Q
    |||||||| |||||||| |||||| ||   |||||||||||| | |||||||||||||||||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccat 30061562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 154 - 315
Target Start/End: Complemental strand, 52041456 - 52041300
Alignment:
Q  154 atatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgc 253  Q
    ||||||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| |||||||||| | ||||||||||      ||     
T  52041456 atatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattt------tgg 52041363  T
Q  254 atagtgc-tttcctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgc 315  Q
     |||||| ||||||||||| |||| | |||||||||||||||||||||||| || ||||||||    
T  52041362 ttagtgcttttcctactcatcaagctaagttcaatttttaaatttccctcctacaacatttgc 52041300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 363 - 460
Target Start/End: Original strand, 2555187 - 2555285
Alignment:
Q  363 atacactaacctcatttctatgtttccaacatgattgttattgtt-tcatgcacattttattctactatctttcccatgcccatgtatacatgtgttat 460  Q
    |||| ||| |||||||||||||||||||| |||||||||||| || |||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  2555187 ataccctatcctcatttctatgtttccaatatgattgttattcttctcatgcacatattattctactctctttcccatgctcatgtatacatgtgttat 2555285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 1141743 - 1141884
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgca 254  Q
    |||||||||||||||| ||||| ||||||||||||||   || |||||||||| ||||||||||||||||||| ||| | |||||||||||   |||       
T  1141743 tatctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaatttt---cat--- 1141836  T
Q  255 tagtg-ctttcctactcagcaagttgagttcaatttttaaatttccct 301  Q
    |||||  ||||||||||| |||| ||||||||||||||||||||||||    
T  1141837 tagtgtttttcctactcaacaagctgagttcaatttttaaatttccct 1141884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 155 - 315
Target Start/End: Original strand, 42655772 - 42655927
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgca 254  Q
    |||||||||||| ||| ||||||||||||||| ||||   |||||||||||||| ||||||||||||| |||||||| | ||||||||||      ||      
T  42655772 tatctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttcccttcatcacccaagcatttaattt------tgat 42655865  T
Q  255 tagtg-ctttcctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgc 315  Q
    |||||  ||||||||||| |||| | ||||||||||||||||||||||||||  ||||||||    
T  42655866 tagtgtttttcctactcatcaagctaagttcaatttttaaatttccctcccataacatttgc 42655927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 22424440 - 22424349
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttg 247  Q
    |||||||||||||||  || ||||||||||| ||||   ||||||||||||||||||||||||||||||||||||  | |||||||||||||    
T  22424440 atctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacctaaacatttaatttttg 22424349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 39484880 - 39484789
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggat-accctaattttaacctaatattttccctccatcaccccatcatttaatttt 245  Q
    |||||||||||||||| ||||| ||||||||| ||  | | |||||| |||||||||||||||||||||||||||||| | |||||||||||    
T  39484880 tatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaaacatttaatttt 39484789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 11582590 - 11582642
Alignment:
Q  172 cttgtctggtcaagcaattggataccctaattttaacctaatattttccctcc 224  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  11582590 cttgtctggtcaagcaatatcataccctaattttaacctaatattttccctcc 11582642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 15291460 - 15291530
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 226  Q
    |||||||||||||||| ||||| ||||||||| ||||  ||||||||| |||||||||| ||||||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccat 15291530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 1529165 - 1529238
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaatt-ttaacctaatattttccctccatca 228  Q
    ||||||||||||||| ||||| ||||||||| ||| |  ||||||||| |||||||||| ||||||||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccatca 1529238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 15996450 - 15996384
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccct 222  Q
    |||||||||||||||| |||||||| |||||| ||||  |||||||||| ||||||||| ||||||||    
T  15996450 tatctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat-ttttccct 15996384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 42655980 - 42656029
Alignment:
Q  408 tcatgcacattttattctactatctttcccatgcccatgtatacatgtgt 457  Q
    ||||| |||| |||||||||| |||||||||||||||| |||||||||||    
T  42655980 tcatgtacatattattctactctctttcccatgcccatatatacatgtgt 42656029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 2550080 - 2550130
Alignment:
Q  255 tagtgctttcctactcagcaagttgagttcaatttttaaatttccctcccac 306  Q
    |||||||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  2550080 tagtgctttcctactcagcaagctga-ttcaatttttaaactttcctcccac 2550130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 9451245 - 9451387
Alignment:
Q  159 tttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgcatagt 258  Q
    |||||||||||| ||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| | ||||||||||| |       ||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaagcatttaattttcg------ttagt 9451338  T
Q  259 gc-tttcctactcagcaagttgagttcaatttttaaatttccctcccac 306  Q
    || |||| |||||| |||| | |||||||||||||||||||||||||||    
T  9451339 gcttttcgtactcatcaagctaagttcaatttttaaatttccctcccac 9451387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 24257703 - 24257777
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcacc 230  Q
    ||||||||||||||| ||||| ||||||||||||||   |||||||||||||||||||||||| |||||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatcacc 24257777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 12094925 - 12094856
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctcca 225  Q
    ||||||||||||||| ||||| ||||||||| ||| || |||||||||||||||||||||||||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 9199512 - 9199576
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttcc 220  Q
    ||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttcc 9199576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 6898824 - 6898752
Alignment:
Q  154 atatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccat 226  Q
    ||||||||||||||||| ||||| || |||||| |||||  |||||||| ||||||||||||||||| |||||    
T  6898824 atatctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccat 6898752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 9199750 - 9199822
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    ||||||||||||||| ||||||||||||||||||   ||| || | | |||||||||||||||||||||||||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatca 9199822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 10427719 - 10427646
Alignment:
Q  154 atatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    |||||||| ||| ||||  |||| ||||||||||||   |||||||||||||||||||||| |||||||||||||    
T  10427719 atatcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaata-tttccctccatca 10427646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 27067874 - 27067940
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccct 222  Q
    ||||||||||||||| ||||| ||||||| | ||   ||||||||||||||| ||||||||||||||    
T  27067874 atctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttccct 27067940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 24257931 - 24257982
Alignment:
Q  408 tcatgcacattttattctactatctttcccatgcccatgtatacatgtgtta 459  Q
    ||||||| ||||||||||||| ||||||||||||||||  ||||||| ||||    
T  24257931 tcatgcagattttattctactctctttcccatgcccatacatacatgcgtta 24257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 156 - 334
Target Start/End: Original strand, 22964007 - 22964180
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgcat 255  Q
    ||||| ||||||||| ||||||||||||||| |||||  ||||||||| |||||||||||||||||||||||| || | |||||||||||||       |    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccatcaaccaagcatttaatttttg------tt 22964100  T
Q  256 agtgc-tttcctactcagcaagttgagttcaatttttaaatttccctcccacgacatttgcattgtgcctatgcatgtac 334  Q
    ||||| |||||||||||||||| | || ||||  | ||||||||||||||||    |||||||| |||| ||||||||||    
T  22964101 agtgcttttcctactcagcaaggtaagctcaaaatctaaatttccctcccacagtctttgcattttgccgatgcatgtac 22964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 15700721 - 15700792
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatc 227  Q
    |||||||||||||||  |||| ||||||||| ||| |  ||||||||||||||||| |||||||||||||||    
T  15700721 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatc 15700792  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 3908888 - 3908810
Alignment:
Q  167 taaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttt 245  Q
    |||| |||||||| |||||| |||||  ||||||||||||||||| |||||||||| ||||| || | |||||||||||    
T  3908888 taaagcttgtctgatcaagctattggtaaccctaattttaacctactattttcccttcatcatccaaacatttaatttt 3908810  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 46555501 - 46555572
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaatt-ttaacctaatattttccctcca 225  Q
    ||||||| |||||||| |||||| |||||||| ||| |  ||||||||| ||||||||||||||||||||||    
T  46555501 tatctttattactaaagcttgtccggtcaagctattagtaaccctaattcttaacctaatattttccctcca 46555572  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 26083903 - 26083975
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    ||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatca 26083975  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 26981034 - 26981107
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    |||||||||||||||| ||||| || |||||||||   |||||||||||||||||||||||||| |||||||||    
T  26981034 tatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatca 26981107  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 42315339 - 42315412
Alignment:
Q  153 aatatctttcttactaaaacttgtctggtcaagcaattggataccctaatt-ttaacctaatattttccctcca 225  Q
    |||||||||||||||||| ||||| ||||||||| ||| |  ||||||||| ||||||||||||||||||||||    
T  42315339 aatatctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 45244356 - 45244285
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaatt-ttaacctaatattttccctcca 225  Q
    ||||||||||||||||  |||||||||||||| ||| |  ||||||||| ||||||||||||||||||||||    
T  45244356 tatctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcca 45244285  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 5334273 - 5334345
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    |||||||||| ||||| || |||| |||| ||||   |||||||||||||||||||| |||||||||||||||    
T  5334273 atctttcttattaaaaattatctgatcaaacaatatcataccctaattttaacctaagattttccctccatca 5334345  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaatttt-aacctaatattttccctcca 225  Q
    ||||||||||||| | ||||| ||||||||| ||| |  ||||||||||| ||||||||||||||||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcca 23828413  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 42932716 - 42932773
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaat 213  Q
    ||||||||||||||| |||||||| |||||||||   ||| |||||||||||||||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 6697935 - 6698007
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 228  Q
    ||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||    
T  6697935 atctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatca 6698007  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 11300837 - 11300764
Alignment:
Q  153 aatatctttcttactaaaacttgtctggtcaagcaattggataccctaa-ttttaacctaatattttccctcca 225  Q
    ||||||||||||||||||||||||||||| |||| ||  |  ||||||| ||||||||||||||||||||||||    
T  11300837 aatatctttcttactaaaacttgtctggtgaagctataagtaaccctaatttttaacctaatattttccctcca 11300764  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 26110687 - 26110758
Alignment:
Q  155 tatctttcttactaaaacttgtctggtcaagcaattggataccctaa-ttttaacctaatattttccctcca 225  Q
    |||||||||||||||||||||| ||||||||| ||  |  ||||||| ||||||||||||||||||||||||    
T  26110687 tatctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 31981793 - 31981927
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacatgcat 255  Q
    |||||| |||||||| ||||| || |||||||||||   | |||||||||||||||||||||||||| |||| | | | |||||||||||   ||||       
T  31981793 atcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccctacatc-ctcaagcatttaatttt---catg--- 31981885  T
Q  256 agtgc-tttcctactcagcaagttgagttcaatttttaaatt 296  Q
    ||||| |||||||||||||||| | |||| ||||||||||||    
T  31981886 agtgcttttcctactcagcaagctaagtttaatttttaaatt 31981927  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 9045160 - 9045195
Alignment:
Q  193 ataccctaattttaacctaatattttccctccatca 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  9045160 ataccctaattttaacctaatattttccctccatca 9045195  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 37337323 - 37337393
Alignment:
Q  156 atctttcttactaaaacttgtctggtcaagcaattggataccctaatttt-aacctaatattttccctcca 225  Q
    ||||||||||||||| ||||| ||||||||| ||  |  ||||||||||| ||||||||||||||||||||    
T  37337323 atctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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