View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21234_high_10 (Length: 237)

Name: NF21234_high_10
Description: NF21234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21234_high_10
NF21234_high_10
[»] chr4 (7 HSPs)
chr4 (22-119)||(23440935-23441031)
chr4 (46-101)||(43970046-43970101)
chr4 (168-207)||(23441059-23441098)
chr4 (24-98)||(22611875-22611949)
chr4 (41-99)||(31861423-31861481)
chr4 (44-101)||(37431780-37431837)
chr4 (74-110)||(35395349-35395385)
[»] chr5 (3 HSPs)
chr5 (22-110)||(1920722-1920810)
chr5 (47-101)||(8151796-8151850)
chr5 (61-110)||(7718539-7718588)
[»] chr7 (3 HSPs)
chr7 (42-115)||(46242581-46242654)
chr7 (132-168)||(37928292-37928328)
chr7 (130-171)||(22931941-22931982)
[»] chr2 (3 HSPs)
chr2 (42-99)||(18717910-18717967)
chr2 (58-110)||(7141163-7141215)
chr2 (66-110)||(43681291-43681335)
[»] chr8 (3 HSPs)
chr8 (42-115)||(30076210-30076283)
chr8 (41-99)||(37561494-37561552)
chr8 (41-94)||(33810058-33810111)
[»] chr1 (2 HSPs)
chr1 (41-94)||(47496881-47496934)
chr1 (46-99)||(32187113-32187166)
[»] scaffold0204 (1 HSPs)
scaffold0204 (38-105)||(15358-15425)
[»] chr6 (1 HSPs)
chr6 (47-110)||(5611130-5611193)
[»] scaffold0039 (1 HSPs)
scaffold0039 (46-110)||(29987-30051)
[»] chr3 (1 HSPs)
chr3 (47-99)||(8380957-8381008)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 23440935 - 23441031
Alignment:
Q  22 ttaaccggtgcctatgggatattgattaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaaccaaataattatttcatc 119  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  23440935 ttaaccggtgcc-ataggatattggttaaggaatttatgaatataaattttattttggaaatataaggtgttacttttaaccaaataattatttcatc 23441031  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 43970046 - 43970101
Alignment:
Q  46 attaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaa 101  Q
    |||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||    
T  43970046 attaaggaatatacgaatataaattttatcttaaaaatataagatgttacttttaa 43970101  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 23441059 - 23441098
Alignment:
Q  168 taaaaacttagcattcccctataaacaaatatctcttaga 207  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  23441059 taaagactttgcattcccctataaacaaatatctcttaga 23441098  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 22611875 - 22611949
Alignment:
Q  24 aaccggtgcctatgggatattgattaaggaatttatgaatataaattttattttaaaaatataaggtgttacttt 98  Q
    |||||||||||   ||||| |||||||| ||| ||  |||||||||||| | ||||||||||||| |||||||||    
T  22611875 aaccggtgccttcaggataatgattaagaaatctacaaatataaattttgtcttaaaaatataagatgttacttt 22611949  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 31861423 - 31861481
Alignment:
Q  41 tattgattaaggaatttatgaatataaattttattttaaaaatataaggtgttactttt 99  Q
    ||||||||||||||||||   ||| ||||||||||||  ||||||||| ||||||||||    
T  31861423 tattgattaaggaatttacatataaaaattttattttggaaatataagatgttactttt 31861481  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 37431780 - 37431837
Alignment:
Q  44 tgattaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaa 101  Q
    |||| ||||||||||  |||| ||||||||| |||||| |||||| ||||||||||||    
T  37431780 tgataaaggaatttacaaataaaaattttatcttaaaattataagatgttacttttaa 37431837  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 35395349 - 35395385
Alignment:
Q  74 ttttaaaaatataaggtgttacttttaaccaaataat 110  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  35395349 ttttaaaaatataagatgttacttttaatcaaataat 35395385  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 1920722 - 1920810
Alignment:
Q  22 ttaaccggtgcctatgggatattgattaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaaccaaataat 110  Q
    |||||| |||||  |||| ||||| ||||| ||| |||||||| ||||||| | ||| |||||||||||||||||||| ||||||||||    
T  1920722 ttaacccgtgcccctggggtattggttaagaaatctatgaatagaaattttgtcttagaaatataaggtgttacttttgaccaaataat 1920810  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 8151796 - 8151850
Alignment:
Q  47 ttaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaa 101  Q
    ||||||||||||| | || ||||||| |||| |||||||||| ||||||||||||    
T  8151796 ttaaggaatttataagtagaaattttgttttgaaaatataagatgttacttttaa 8151850  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 7718588 - 7718539
Alignment:
Q  61 aatataaattttattttaaaaatataaggtgttacttttaaccaaataat 110  Q
    |||||||||||||| ||||||||||||| ||||| ||||||  |||||||    
T  7718588 aatataaattttatcttaaaaatataagatgttatttttaatgaaataat 7718539  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 46242581 - 46242654
Alignment:
Q  42 attgattaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaaccaaataattattt 115  Q
    ||||||||||||||| || |||| ||||||||| | |||| |||||||||||| |||| | |||||||||||||    
T  46242581 attgattaaggaattcataaatagaaattttatctaaaaattataaggtgttatttttgatcaaataattattt 46242654  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 37928328 - 37928292
Alignment:
Q  132 aaaacttccttattttggatgtttaaccaatgtcctt 168  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37928328 aaaacttacttattttggatgtttaaccaatgtcctt 37928292  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 22931941 - 22931982
Alignment:
Q  130 tgaaaacttccttattttggatgtttaaccaatgtccttaaa 171  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  22931941 tgaaaatttacttattttggttgtttaaccaatgtccttaaa 22931982  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 18717967 - 18717910
Alignment:
Q  42 attgattaaggaatttatgaatataaattttattttaaaaatataaggtgttactttt 99  Q
    |||| ||||||||||||  |||| ||||||||||||||||||||||| ||||||||||    
T  18717967 attggttaaggaatttacaaatagaaattttattttaaaaatataagatgttactttt 18717910  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 7141215 - 7141163
Alignment:
Q  58 atgaatataaattttattttaaaaatataaggtgttacttttaaccaaataat 110  Q
    ||||||| ||||||| | || |||| |||||||||||||||| ||||||||||    
T  7141215 atgaatagaaattttgtcttgaaaacataaggtgttacttttgaccaaataat 7141163  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 43681291 - 43681335
Alignment:
Q  66 aaattttattttaaaaatataaggtgttacttttaaccaaataat 110  Q
    |||||||||||| |||||||||| ||||| |||| ||||||||||    
T  43681291 aaattttattttgaaaatataagatgttattttttaccaaataat 43681335  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 30076283 - 30076210
Alignment:
Q  42 attgattaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaaccaaataattattt 115  Q
    |||||||||||||||  | || | ||||||| ||||||||||||||| |||||||||| | |||||||| ||||    
T  30076283 attgattaaggaattattaaaaagaaattttgttttaaaaatataagatgttacttttgatcaaataatgattt 30076210  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 37561494 - 37561552
Alignment:
Q  41 tattgattaaggaatttatgaatataaattttattttaaaaatataaggtgttactttt 99  Q
    ||||| |||| |||||||| |||| |||||||||||| |||||||||| | ||||||||    
T  37561494 tattggttaaagaatttataaatagaaattttattttgaaaatataagattttactttt 37561552  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 33810058 - 33810111
Alignment:
Q  41 tattgattaaggaatttatgaatataaattttattttaaaaatataaggtgtta 94  Q
    ||||| ||||||||||||  |||| ||||||||| ||||||||||||| |||||    
T  33810058 tattggttaaggaatttagaaatagaaattttatcttaaaaatataagttgtta 33810111  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 47496934 - 47496881
Alignment:
Q  41 tattgattaaggaatttatgaatataaattttattttaaaaatataaggtgtta 94  Q
    ||||| ||||||||||||| |||| ||||||||| ||||||||||||| |||||    
T  47496934 tattggttaaggaatttataaatagaaattttatcttaaaaatataagttgtta 47496881  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 32187166 - 32187113
Alignment:
Q  46 attaaggaatttatgaatataaattttattttaaaaatataaggtgttactttt 99  Q
    |||||||||||||| |||| ||||||| | || |||||||||| ||||||||||    
T  32187166 attaaggaatttataaatagaaattttgtcttgaaaatataagatgttactttt 32187113  T

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Target: scaffold0204 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 15358 - 15425
Alignment:
Q  38 ggatattgattaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaaccaa 105  Q
    ||||| |||||||||||||||| |||| || |||| | || |||||||||| |||||||||| |||||    
T  15358 ggataatgattaaggaatttataaatagaatttttgtcttgaaaatataagatgttacttttgaccaa 15425  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 5611130 - 5611193
Alignment:
Q  47 ttaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaaccaaataat 110  Q
    ||||||||| ||| |||| ||||||| | ||| ||||||||| |||||||||||| ||||||||    
T  5611130 ttaaggaatctataaatagaaattttgtcttagaaatataagatgttacttttaatcaaataat 5611193  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 29987 - 30051
Alignment:
Q  46 attaaggaatttatgaatataaattttattttaaaaatataaggtgttacttttaaccaaataat 110  Q
    |||||||||| ||  |||| ||| |||||||| |||||||||| ||||||||||||  |||||||    
T  29987 attaaggaatctacaaatagaaactttattttgaaaatataagatgttacttttaattaaataat 30051  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 8380957 - 8381008
Alignment:
Q  47 ttaaggaatttatgaatataaattttattttaaaaatataaggtgttactttt 99  Q
    |||| |||||||| ||||||| |||||||||||||||||||| ||||| ||||    
T  8380957 ttaaagaatttataaatataa-ttttattttaaaaatataagttgttattttt 8381008  T

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