View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21234_high_3 (Length: 515)
Name: NF21234_high_3
Description: NF21234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21234_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 40382419 - 40382764
Alignment:
| Q |
10 |
aagaatatgagtcgtgaaaatcacaaaagcctgcatatgcaatatgcatagtactatagtagagaattccaggggccttattagcnnnnnnngaagagaa |
109 |
Q |
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| T |
40382419 |
aagaaaatgagtcgtgaaaatcagaaaagcctgcatatgcaatatgcatagtactatagtagagaattccttgg-ccttattagcaaaaaaagaagagaa |
40382517 |
T |
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| Q |
110 |
ttctttgacctttcaagtcaaccatcccttaggtgcaa--------ttgcaagtaagttccatttgaatttcacgtgcaattaatttgtggatgccacta |
201 |
Q |
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| T |
40382518 |
ttctttgacctttcaagtcaaccatcccttaggtgcaaatgtgcaattgcaagtaagttccatttgaatttcacgtgcaattaatttgtggatgccacta |
40382617 |
T |
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| Q |
202 |
ttttgtactattac--tagtactagtactatatactttgcctagtcacataattatataagtgatgatagtgacgtgatgctagtcaagaaattaatcct |
299 |
Q |
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| T |
40382618 |
ttttgtactattacactagtactagtaccatatactttgcctagtcacatacttatataagtgatgatagtgacgtgatgctagtcaagaaattaatcct |
40382717 |
T |
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| Q |
300 |
ggaccaccaaacatgcatgtgtttgattattcatcttgcgtttcaaacttt |
350 |
Q |
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| T |
40382718 |
ggaccaccaaa----catgtgtttgattgttcatcttgcgtttcaaacttt |
40382764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 319 - 496
Target Start/End: Original strand, 40382779 - 40382958
Alignment:
| Q |
319 |
tgtttgattattcatcttgcgtttcaaactttacttgggtgatatataaataattaactagaacaaggaattttccttctttcatca--atatatataag |
416 |
Q |
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| T |
40382779 |
tgtttgattattcatcttgcgtttcaaagtttacttgggtgatatataaataattaactagaacaaggaattttccttctttcatcaatatatatataag |
40382878 |
T |
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| Q |
417 |
gctaatatgcatgccacgcaccccattaacatttataataaatcatggaggatgttgaggtttttggtctatggtcaagt |
496 |
Q |
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| T |
40382879 |
gctaatatgcatgccacgcaccccattaacatttataataaatcatggaggatgttaaggtttttggtctatggtcaagt |
40382958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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