View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21234_high_5 (Length: 371)
Name: NF21234_high_5
Description: NF21234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21234_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 39849079 - 39848709
Alignment:
| Q |
1 |
acctttgactgtccgcgtgcgcttctgctttgttgaggcagtcatgctcatcatgttatccatgtgtgcgtcaatatctgaaacaaccacaaattcaaag |
100 |
Q |
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| T |
39849079 |
acctttgactttcctcgtgcgcttctgctttgttgaggcagtcatgctcatcctgttatccatgtgtgcgtccatatctgaaacatccacaaattcaaag |
39848980 |
T |
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| Q |
101 |
agaaatcaaaatactgaacatcaagccctatccagcaatcaagtcccaagtgataaattatgataaaaattaaaataaggaaagtgagtaatacgtaaca |
200 |
Q |
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| T |
39848979 |
agaaatcaaaatactgaacatcaagccctatccagcaatcaagtcccaagtgataaattatgataaaaattaaaataaggaaagtgagtaatacgtaaca |
39848880 |
T |
|
| Q |
201 |
actaaattaaaatggaaagaaaacaccagctaatgtactatttttgatatacttgatgttgttactgatgtcaaacacacacaaaatatttgaaattgag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39848879 |
actaaattaaaatggaaagaaaacaccagctaatgtactatttttgatatacttgatgttgttactgatgtcaaaca--cacaaaatatttgaaattgag |
39848782 |
T |
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| Q |
301 |
aatg--------------------atctaaattttaagagtacaattgattacactaactaacatgtaacaag |
353 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848781 |
aacgactaatgagtccaagacacaatctaaattttaagagtacaattgattacactaactaacatgtaacaag |
39848709 |
T |
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