View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21234_high_6 (Length: 329)

Name: NF21234_high_6
Description: NF21234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21234_high_6
NF21234_high_6
[»] chr8 (18 HSPs)
chr8 (19-316)||(43917567-43917864)
chr8 (31-157)||(35901411-35901537)
chr8 (88-156)||(11150971-11151039)
chr8 (84-156)||(3347507-3347579)
chr8 (88-186)||(33621415-33621514)
chr8 (37-156)||(10029160-10029279)
chr8 (78-156)||(600411-600489)
chr8 (83-156)||(13873741-13873814)
chr8 (34-159)||(18200674-18200799)
chr8 (78-160)||(2768553-2768635)
chr8 (99-156)||(44648934-44648991)
chr8 (104-151)||(6270151-6270198)
chr8 (111-157)||(41726968-41727014)
chr8 (99-156)||(18045343-18045400)
chr8 (99-151)||(20542447-20542499)
chr8 (93-151)||(32881167-32881225)
chr8 (84-138)||(33945002-33945056)
chr8 (111-153)||(41675670-41675712)
[»] chr6 (8 HSPs)
chr6 (36-151)||(5611130-5611245)
chr6 (99-157)||(19320266-19320324)
chr6 (92-157)||(33121306-33121371)
chr6 (93-154)||(17345840-17345901)
chr6 (88-151)||(32134095-32134158)
chr6 (99-156)||(227395-227452)
chr6 (110-151)||(31223255-31223296)
chr6 (84-156)||(2398053-2398125)
[»] chr2 (15 HSPs)
chr2 (89-151)||(23453395-23453457)
chr2 (19-157)||(40346688-40346826)
chr2 (31-151)||(13738396-13738516)
chr2 (111-156)||(42551959-42552004)
chr2 (111-157)||(1004770-1004816)
chr2 (86-156)||(5444488-5444558)
chr2 (84-129)||(8312425-8312470)
chr2 (37-129)||(4978775-4978867)
chr2 (37-129)||(4996683-4996775)
chr2 (96-151)||(13717234-13717289)
chr2 (19-151)||(40574144-40574276)
chr2 (19-70)||(43080387-43080438)
chr2 (88-129)||(7141163-7141204)
chr2 (84-152)||(4623730-4623798)
chr2 (88-156)||(5525281-5525349)
[»] chr1 (17 HSPs)
chr1 (19-151)||(13969100-13969232)
chr1 (78-159)||(32187092-32187173)
chr1 (88-156)||(46295867-46295935)
chr1 (99-156)||(10226458-10226515)
chr1 (78-156)||(17169266-17169344)
chr1 (110-156)||(39993449-39993495)
chr1 (99-156)||(8001743-8001800)
chr1 (99-151)||(27688539-27688591)
chr1 (84-156)||(40699295-40699367)
chr1 (114-157)||(9209304-9209347)
chr1 (84-151)||(30941470-30941537)
chr1 (84-151)||(48282892-48282959)
chr1 (84-178)||(11449105-11449200)
chr1 (99-151)||(17644772-17644824)
chr1 (105-157)||(41936211-41936263)
chr1 (88-148)||(48579945-48580005)
chr1 (93-165)||(50015762-50015834)
[»] chr4 (21 HSPs)
chr4 (37-156)||(27284070-27284189)
chr4 (100-170)||(22611878-22611949)
chr4 (93-157)||(12076423-12076487)
chr4 (78-156)||(37431778-37431856)
chr4 (99-156)||(31089512-31089569)
chr4 (84-148)||(44190264-44190328)
chr4 (37-165)||(16341089-16341217)
chr4 (99-157)||(55126772-55126831)
chr4 (88-178)||(23440932-23441022)
chr4 (78-151)||(13967884-13967957)
chr4 (84-137)||(41142309-41142362)
chr4 (84-128)||(35395345-35395389)
chr4 (84-151)||(19147149-19147216)
chr4 (110-156)||(22444272-22444318)
chr4 (88-154)||(31861426-31861492)
chr4 (99-151)||(12095018-12095070)
chr4 (104-160)||(22019668-22019724)
chr4 (84-151)||(31241952-31242020)
chr4 (84-156)||(31991454-31991526)
chr4 (84-124)||(39810731-39810771)
chr4 (96-152)||(43970046-43970102)
[»] scaffold0204 (1 HSPs)
scaffold0204 (99-160)||(15358-15419)
[»] scaffold0036 (1 HSPs)
scaffold0036 (78-157)||(36571-36650)
[»] chr3 (12 HSPs)
chr3 (88-154)||(11676734-11676800)
chr3 (88-156)||(6785790-6785858)
chr3 (88-156)||(44698267-44698335)
chr3 (96-156)||(55446789-55446849)
chr3 (36-156)||(28709562-28709682)
chr3 (88-156)||(635701-635769)
chr3 (84-151)||(15671118-15671185)
chr3 (111-156)||(4020170-4020215)
chr3 (19-156)||(1711920-1712057)
chr3 (42-151)||(12109653-12109762)
chr3 (84-156)||(26613061-26613133)
chr3 (84-154)||(43652467-43652537)
[»] chr5 (15 HSPs)
chr5 (88-157)||(36482100-36482169)
chr5 (19-156)||(22293964-22294101)
chr5 (88-151)||(30293824-30293887)
chr5 (94-156)||(27544644-27544706)
chr5 (110-156)||(34346953-34346999)
chr5 (99-156)||(11815971-11816028)
chr5 (88-160)||(30840590-30840662)
chr5 (88-135)||(2089133-2089180)
chr5 (84-151)||(14863381-14863448)
chr5 (93-151)||(8151796-8151854)
chr5 (84-178)||(11320170-11320264)
chr5 (110-151)||(18242510-18242551)
chr5 (84-156)||(3600155-3600227)
chr5 (111-151)||(12187255-12187295)
chr5 (110-158)||(15139164-15139212)
[»] scaffold0039 (1 HSPs)
scaffold0039 (84-152)||(29987-30055)
[»] chr7 (24 HSPs)
chr7 (37-158)||(16979940-16980061)
chr7 (29-158)||(43626337-43626466)
chr7 (84-154)||(18037848-18037918)
chr7 (88-154)||(18756912-18756978)
chr7 (84-145)||(28004218-28004279)
chr7 (78-159)||(42888342-42888423)
chr7 (99-151)||(19677055-19677107)
chr7 (84-152)||(21515064-21515132)
chr7 (104-156)||(34993094-34993146)
chr7 (84-156)||(43118851-43118923)
chr7 (37-157)||(1309719-1309839)
chr7 (94-156)||(8896594-8896656)
chr7 (94-154)||(28012890-28012949)
chr7 (78-153)||(5871234-5871308)
chr7 (84-147)||(8117449-8117512)
chr7 (29-151)||(16685721-16685845)
chr7 (29-151)||(17659957-17660081)
chr7 (94-145)||(31249568-31249619)
chr7 (84-151)||(45907035-45907102)
chr7 (37-151)||(18220987-18221102)
chr7 (88-138)||(31850762-31850812)
chr7 (84-129)||(34993151-34993196)
chr7 (84-156)||(39786448-39786520)
chr7 (84-152)||(41434746-41434814)
[»] scaffold0002 (1 HSPs)
scaffold0002 (99-156)||(120729-120786)
[»] scaffold0079 (1 HSPs)
scaffold0079 (37-165)||(51644-51772)
[»] scaffold0283 (1 HSPs)
scaffold0283 (99-145)||(3385-3431)
[»] scaffold0034 (1 HSPs)
scaffold0034 (84-154)||(22422-22492)
[»] scaffold0329 (1 HSPs)
scaffold0329 (88-128)||(7408-7448)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 43917567 - 43917864
Alignment:
Q  19 aaccagtgcaccaaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattt 118  Q
    ||||||||||  ||||||||||||||||||||||||| ||| ||||||||||       ||||  |||||||||||||||||||||||| ||||||||||    
T  43917567 aaccagtgcattaaggatattggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaacgccttatattt 43917666  T
Q  119 tcaagacaaaaattttatttgtagattccttaatcattatccgaaggcaccgattaacaaaacatttatcattattctgtctccaaagcttttggtcttt 218  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43917667 tcaagacaaaaattttatttgtagattctttaatcattatccgaagacaccgattaacaaaacatttatcattattctgtctccaaagcttttggtcttt 43917766  T
Q  219 tggcctttttatttgcttaatcatttccacttcttttaatctctccttaaattatacgatacataataaacttcatcaaatgtcatgctagttaacct 316  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43917767 tggcctttttatttgcttaatgatttccacttcttttaatctctccttaaattatacaatacataataaacttcatcaaatgtcatgctagttaacct 43917864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 35901537 - 35901411
Alignment:
Q  31 aaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaa 130  Q
    |||| |||||||||||||||||||| ||| || |||||||       |||| |||| ||||||| ||||||||||||| |||| |||||||| ||||||     
T  35901537 aagggtattggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaat 35901438  T
Q  131 ttttatttgtagattccttaatcatta 157  Q
    || |||||||||||||||||| |||||    
T  35901437 ttctatttgtagattccttaaccatta 35901411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 11150971 - 11151039
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  11150971 attatttgatcaaaagtaacatcttatatttctaagacaaaaattttatttgtagattccttaatcatt 11151039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 3347579 - 3347507
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  3347579 aattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaaccatt 3347507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 33621415 - 33621514
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatcc-gaaggcaccgattaacaaaacattta 186  Q
    |||| ||||| |||||||| |  ||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||| |||||| ||||    
T  33621415 attacttgatcaaaagtaaaattttatatttttaagacaaaatttttatttgtagattccttaattattatcctgaaggcaccggttagcaaaactttta 33621514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 10029160 - 10029279
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttat 136  Q
    ||||||||||||||||||  ||| ||||||||||       ||||| ||| |||| ||||| |||||||||| ||||||||| ||||| |||| ||||||    
T  10029160 attggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatatttccaagataaaatttttat 10029259  T
Q  137 ttgtagattccttaatcatt 156  Q
    ||||||||| ||||| ||||    
T  10029260 ttgtagatttcttaaccatt 10029279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 600411 - 600489
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| |||| |||| || || |||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||    
T  600411 ttgtgcaatcattactttatcaaaagtaacatcttatatttccaagccaaaaaatttatttgtagattccttaatcatt 600489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 13873741 - 13873814
Alignment:
Q  83 caattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| |||| || ||||||| ||||| |||||||||  |||||||||||||||||| |||||||||||||||||    
T  13873741 caatcattacttaattaaaaataacatcttatatttctaagacaaaaattttatttatagattccttaatcatt 13873814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 18200799 - 18200674
Alignment:
Q  34 gatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattt 133  Q
    |||||| ||||||||||||||||||| ||  ||||||       ||||  ||| |||| || || ||||||||||  ||||||||| ||||||||| |||    
T  18200799 gatatttgttaagcatccaaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttt 18200700  T
Q  134 tatttgtagattccttaatcattatc 159  Q
    |||||||||||| ||||| |||||||    
T  18200699 tatttgtagatttcttaaccattatc 18200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 2768635 - 2768553
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatcc 160  Q
    |||| |||| ||||||| ||||||| |||||  |||||||| |||||||||| ||||||||||||| ||||||| || |||||    
T  2768635 ttgtgcaatcattatttaattaaaactaacattttatatttccaagacaaaatttttatttgtagaatccttaaccaatatcc 2768553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 44648991 - 44648934
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||||||  ||||||||||||||||||| || |||||||||||||||||| ||||    
T  44648991 aaaagtaacattttatattttcaagacaaaatttctatttgtagattccttaaccatt 44648934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 6270198 - 6270151
Alignment:
Q  104 taacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  6270198 taacaccttatatttccaagacaaaatttttaattgtagattccttaa 6270151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 41726968 - 41727014
Alignment:
Q  111 ttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  41726968 ttatatttccaagacaaaatttttatttgtagattccttaaccatta 41727014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 18045343 - 18045400
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||||||  ||||||||||||||||||| ||||| |||||||||| |||| ||||    
T  18045343 aaaagtaacatattatattttcaagacaaaatttttagttgtagattctttaaccatt 18045400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 20542447 - 20542499
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||||| ||||||||| |||||| ||| || ||||||||||||||||||    
T  20542447 aaaagtaacatcttatatttccaagacgaaatttctatttgtagattccttaa 20542499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 32881167 - 32881225
Alignment:
Q  93 ttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||| |||| ||| | |||||||||| ||||||||| ||||||||||||||| |||||    
T  32881167 ttgataaaaaataatatcttatatttttaagacaaaatttttatttgtagatttcttaa 32881225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 33945056 - 33945002
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttattt 138  Q
    |||||||| ||  |||||||||||   ||||||||||||||||||||||||||||    
T  33945056 aattattaattagttaaaagtaactgtttatattttcaagacaaaaattttattt 33945002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 41675712 - 41675670
Alignment:
Q  111 ttatattttcaagacaaaaattttatttgtagattccttaatc 153  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  41675712 ttatattttcaaaacagaaattctatttgtagattccttaatc 41675670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 5611245 - 5611130
Alignment:
Q  36 tattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaatttta 135  Q
    |||||||||| ||||||||| ||| || |||||||       ||||| ||||||||||||||||||||||||| |||||||||  ||||||||| || ||    
T  5611245 tattggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttcta 5611146  T
Q  136 tttgtagattccttaa 151  Q
    ||| ||||||||||||    
T  5611145 tttatagattccttaa 5611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 19320324 - 19320266
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    ||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  19320324 aaaagtaacattttatatttgcaagacaaaaaatttatttgtagattccttaatcatta 19320266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 33121371 - 33121306
Alignment:
Q  92 tttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||| | ||| ||||| |||||    
T  33121371 tttgataaaaaataacatcttatattttcaagacaaaaattttatttgaaaatttcttaaccatta 33121306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 17345901 - 17345840
Alignment:
Q  93 ttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    ||||| ||||||||||  ||||||||| || |||||| |||||||||| |||||||||||||    
T  17345901 ttgatcaaaagtaacattttatatttttaaaacaaaatttttatttgttgattccttaatca 17345840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 32134095 - 32134158
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||| ||||| |||| ||||| |||||||| |||| |||||| || ||||||||||||||||||    
T  32134095 attacttgataaaaaataacatcttatattctcaaaacaaaatttctatttgtagattccttaa 32134158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 227395 - 227452
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||||| ||||||||||||| | |||| || ||||| |||||||||||| ||||    
T  227395 aaaagtaacatcttatattttcaaaaaaaaatttctatttatagattccttaaccatt 227452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 31223255 - 31223296
Alignment:
Q  110 cttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  31223255 cttatatttccaagacaaaatttttatttgtagattcattaa 31223296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 2398053 - 2398125
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||| || || |||||| | | ||||||||||||||| |||  || ||||| |||||||||||||||||    
T  2398053 aattattacttaatcaaaagtcaaaacttatattttcaagataaattttctatttatagattccttaatcatt 2398125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 23453395 - 23453457
Alignment:
Q  89 ttatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  23453395 ttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatttgtagattccttaa 23453457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 40346688 - 40346826
Alignment:
Q  19 aaccagtgcaccaaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattt 118  Q
    ||||||||| ||||   |||| |||||| |||||||||||| || |||||||       |||| |||| |||||||||| |||| ||||| |||||||||    
T  40346688 aaccagtgccccaaatgtattagttaagtatccaaaataagtaagtttttatgaaaaagttgtgcaatcattatttgatcaaaaataacatcttatattt 40346787  T
Q  119 tcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    |||| |||||| || ||| |||||||||||||| |||||    
T  40346788 tcaatacaaaatttctatatgtagattccttaaccatta 40346826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 13738516 - 13738396
Alignment:
Q  31 aaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaa 130  Q
    ||||||||||||||||||||||||| ||| || |||||||       ||||  ||| |||| || || | |||||||| ||||||||||||| ||||||     
T  13738516 aaggatattggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaat 13738417  T
Q  131 ttttatttgtagattccttaa 151  Q
    |||||||| ||||||||||||    
T  13738416 ttttatttatagattccttaa 13738396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 42552004 - 42551959
Alignment:
Q  111 ttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||    
T  42552004 ttatatcttcaagacaaaaattttatttgtagattccttaaccatt 42551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 1004816 - 1004770
Alignment:
Q  111 ttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||    
T  1004816 ttatattttcaagacaaaatttctatttgtagattccttaaccatta 1004770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 5444558 - 5444488
Alignment:
Q  86 ttattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||| || ||||||||| | | |||||||||||||||||||| |||||||| ||| ||| |||||||||    
T  5444558 ttattacttaattaaaagtcaaaacttatattttcaagacaaaatttttatttatagtttctttaatcatt 5444488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 8312470 - 8312425
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaa 129  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  8312470 aattattatttgattgaaagtaacaacttatattttcaaaacaaaa 8312425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 4978867 - 4978775
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaa 129  Q
    ||||||||| ||||||||||||  || |||||||       ||||  ||| |||| ||||| |||||||||| ||||||||||||||||||||    
T  4978867 attggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaa 4978775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 4996775 - 4996683
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaa 129  Q
    ||||||||| ||||||||||||  || |||||||       ||||  ||| |||| ||||| |||||||||| ||||||||||||||||||||    
T  4996775 attggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaa 4996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 13717234 - 13717289
Alignment:
Q  96 attaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||||| |||||  ||||||||||||||||||| || |||||||| |||||||||    
T  13717234 attaaaaataacattttatattttcaagacaaaatttctatttgtatattccttaa 13717289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 40574276 - 40574144
Alignment:
Q  19 aaccagtgcaccaaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattt 118  Q
    ||||||||| ||||||  | ||||||||||||||||| ||| | ||||| ||       ||||  |||||||| |  || |||||| |||  ||||||||    
T  40574276 aaccagtgccccaagggcaatggttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagttacattttatattt 40574177  T
Q  119 tcaagacaaaaattttatttgtagattccttaa 151  Q
     |||||||||| || ||||||||||||||||||    
T  40574176 ccaagacaaaatttctatttgtagattccttaa 40574144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 43080438 - 43080387
Alignment:
Q  19 aaccagtgcaccaaggatattggttaagcatccaaaataagcaaatttttat 70  Q
    ||||||||| |  |||||||||||||||||||||||| || |||||||||||    
T  43080438 aaccagtgccctgaggatattggttaagcatccaaaacaatcaaatttttat 43080387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 7141163 - 7141204
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaa 129  Q
    |||||||| | |||||||||||||||| ||||||||||||||    
T  7141163 attatttggtcaaaagtaacaccttatgttttcaagacaaaa 7141204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 4623798 - 4623730
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaat 152  Q
    |||||||| ||| |||||||||||| |||||| ||| || |||||  |||||||| ||||||| |||||    
T  4623798 aattattagttggttaaaagtaacaacttataattttaacacaaattttttatttatagattctttaat 4623730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 5525349 - 5525281
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||| | ||| |||||| ||||  |||||||||||||| ||||| || || ||||||||||||||    
T  5525349 attatttggtcaaatgtaacatcttacgttttcaagacaaaacttttaattttaaattccttaatcatt 5525281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 13969232 - 13969100
Alignment:
Q  19 aaccagtgcaccaaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattt 118  Q
    ||||||||| |||||  ||||||||||||| |||||| ||| || |||||||       ||||  ||| |||| || |||||||||||||  ||||||||    
T  13969232 aaccagtgccccaagagtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattt 13969133  T
Q  119 tcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||||||||| || ||||||||||||||||||    
T  13969132 tcaagacaaaatttctatttgtagattccttaa 13969100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 32187092 - 32187173
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatc 159  Q
    |||| |||||||||| |||| |||||||||| |||||||||||||||||||| || ||||| || |||||||||| ||||||    
T  32187092 ttgtgcaattattatctgatcaaaagtaacatcttatattttcaagacaaaatttctatttataaattccttaattattatc 32187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 46295935 - 46295867
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| ||||| ||||||||||  |||||||||||||| |||| ||||||||||||||||||||| ||||    
T  46295935 attacttgatcaaaagtaacattttatattttcaagataaaatttttatttgtagattccttaaccatt 46295867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 10226515 - 10226458
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||    
T  10226515 aaaattaacatcttatattttcaagacaaaatttctatttgtagattccttactcatt 10226458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 17169344 - 17169266
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||| ||| |||| || || |||| ||||| |||||||||||||||||| | ||||||||||| ||| ||||||||||    
T  17169344 ttgtataataattactttatcaaaaataacatcttatattttcaagacaatatttttatttgtaaatttcttaatcatt 17169266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 39993449 - 39993495
Alignment:
Q  110 cttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  39993449 cttatattttcaagacaaaatttttatttgtagatttcttaaccatt 39993495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 8001800 - 8001743
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||||| ||||||||||||||| |||| || ||||| |||||||||||| ||||    
T  8001800 aaaagtaacatcttatattttcaagataaaatttctatttctagattccttaaccatt 8001743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 27688539 - 27688591
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||||| ||||||||||||| | |||| ||| |||||||||||||||||    
T  27688539 aaaagtaacatcttatattttcaatataaaattttaatttgtagattccttaa 27688591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 40699295 - 40699367
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||| | ||| |||||||| | ||||| ||| ||||||||||| | |||||||||||||||||| ||||    
T  40699295 aattattactcgatcaaaagtaaaatcttatgtttccaagacaaaaaatgtatttgtagattccttaaccatt 40699367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 9209304 - 9209347
Alignment:
Q  114 tattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||    
T  9209304 tattttcaaaacaaaacttttatttatagattccttaatcatta 9209347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 30941537 - 30941470
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||||| |||||| |||| |||||  |||||||| ||||||||||| | |||||| |||||||||||    
T  30941537 aattattgtttgataaaaaataacatgttatatttccaagacaaaaaatgtatttgaagattccttaa 30941470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 48282959 - 48282892
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||||||  |||| |||||| |||  |||||||||||||||| ||||| ||||| ||||||||||||    
T  48282959 aattattacctgataaaaagtgacagattatattttcaagacagaaattctatttatagattccttaa 48282892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 11449105 - 11449200
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatcc--gaaggcaccgattaacaa 178  Q
    ||||||||  |||| |||| |||||  ||||||||| ||||||||  |||||||||||||||| |||| |||| |||  |||||||| |||||||||    
T  11449105 aattattacatgatcaaaattaacatattatatttttaagacaaattttttatttgtagattctttaaccatt-tccgtgaaggcactgattaacaa 11449200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 17644824 - 17644772
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||||| |||| |||| |||||||||| |  ||||||||||||||||||    
T  17644824 aaaagtaacaacttaaatttccaagacaaaattactatttgtagattccttaa 17644772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 41936211 - 41936263
Alignment:
Q  105 aacaccttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    |||| |||||||||||||||||||  |||||||| ||| ||||| ||||||||    
T  41936211 aacaacttatattttcaagacaaattttttatttatagtttcctcaatcatta 41936263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 48579945 - 48580005
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattcct 148  Q
    ||||||||||||||| | ||| |||||||||  ||||||||| || |||| ||||||||||    
T  48579945 attatttgattaaaaattacatcttatatttctaagacaaaatttctattagtagattcct 48580005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 50015834 - 50015762
Alignment:
Q  93 ttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatccgaagg 165  Q
    ||||| |||||||| | | |||||||| ||||||||| |  |||||  |||||||||||||||||||| ||||    
T  50015834 ttgatcaaaagtaatatcatatatttttaagacaaaattcctattttgagattccttaatcattatcctaagg 50015762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 27284070 - 27284189
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttat 136  Q
    ||||||||| ||||||||||||  || |||||||       |||| |||| |||||||||| |||||||||| ||||||||| |||||||||| || |||    
T  27284070 attggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaatttctat 27284169  T
Q  137 ttgtagattccttaatcatt 156  Q
     |||||||||||||| ||||    
T  27284170 atgtagattccttaaccatt 27284189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 22611949 - 22611878
Alignment:
Q  100 aaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatcc-gaaggcaccg 170  Q
    ||||||||| |||||||||| ||||||||| || |||||||||||| |||||||||||||| ||||||||||    
T  22611949 aaagtaacatcttatatttttaagacaaaatttatatttgtagatttcttaatcattatcctgaaggcaccg 22611878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 12076487 - 12076423
Alignment:
Q  93 ttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    ||||| |||| ||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  12076487 ttgatcaaaattaacatcttatattttcaagacaaaatttttatttgaagattccttaaccatta 12076423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 37431856 - 37431778
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| ||||||||| || ||||||||||||| |||||| ||| |||| |||| ||||||||||| ||||||| ||||||    
T  37431856 ttgtgcaattattacttaattaaaagtaacatcttataattttaagataaaatttttatttgtaaattcctttatcatt 37431778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 31089569 - 31089512
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||||| ||||||||||  |||||||| |||||||| |||||||||||||||||    
T  31089569 aaaagtaacatcttatattttttagacaaaatttttatttatagattccttaatcatt 31089512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 44190264 - 44190328
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattcct 148  Q
    |||||||| ||||| |||||||||| ||||||||||||||| |||| || |||||||| ||||||    
T  44190264 aattattacttgatcaaaagtaacatcttatattttcaagataaaatttatatttgtatattcct 44190328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 165
Target Start/End: Complemental strand, 16341217 - 16341089
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttat 136  Q
    ||||||||| ||||||||||||  ||||||||||       || |  ||| |||| || || ||||||||||  ||||||||  ||||||||||||||||    
T  16341217 attggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttat 16341118  T
Q  137 ttgtagattccttaatcattatccgaagg 165  Q
    ||||| ||||||||| |||| ||| ||||    
T  16341117 ttgtaaattccttaaccattgtcctaagg 16341089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 55126831 - 55126772
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattcc-ttaatcatta 157  Q
    ||||||||||  |||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  55126831 aaaagtaacattttatattttcaaaacaaaaaatttatttgtagattcctttaatcatta 55126772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 23441022 - 23440932
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatccgaaggcaccgattaacaa 178  Q
    |||||||| |||||||||||||||||||||| ||| | |||| || ||||  || ||||||||| || ||||| | ||||||| |||||||    
T  23441022 attatttggttaaaagtaacaccttatatttccaaaataaaatttatattcataaattccttaaccaatatcctatggcaccggttaacaa 23440932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 13967884 - 13967957
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    ||||| ||| |||| ||||| |||| ||||| ||||||||  |||||||||| || ||||||||||||||||||    
T  13967884 ttgtataatcattacttgataaaaaataacatcttatattaccaagacaaaatttctatttgtagattccttaa 13967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 41142362 - 41142309
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatt 137  Q
    ||||||||||| || |||||||| ||||||| |||||||||||||| |||||||    
T  41142362 aattattatttaatcaaaagtaagaccttattttttcaagacaaaatttttatt 41142309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 35395389 - 35395345
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaa 128  Q
    ||||||||||||||||||||||||| |||||||||| || |||||    
T  35395389 aattattatttgattaaaagtaacatcttatatttttaaaacaaa 35395345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 19147216 - 19147149
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||||||||| |||||| |||  |||||||||||||||| ||||| || || |||||| |||||    
T  19147216 aattattatttgataaaaagtgacagtttatattttcaagacagaaattctacttatagatttcttaa 19147149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 22444318 - 22444272
Alignment:
Q  110 cttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||||||||||||||| ||| |||||||||| | ||||||||||    
T  22444318 cttatattttcaagacaaatattctatttgtagaattcttaatcatt 22444272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 31861492 - 31861426
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    |||| ||||| |||||||||| ||||||||| ||| | |||| |||||| |||| ||||||||||||    
T  31861492 attacttgatcaaaagtaacatcttatatttccaaaataaaatttttatatgtaaattccttaatca 31861426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 12095018 - 12095070
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||| | |||||||||||||  ||||| || ||||||||||||||||||    
T  12095018 aaaagtaatatcttatattttcaatgcaaaatttctatttgtagattccttaa 12095070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 22019668 - 22019724
Alignment:
Q  104 taacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatcc 160  Q
    ||||| |||||||||| ||||||||| ||| |||| |||||||||||| || |||||    
T  22019668 taacatcttatattttaaagacaaaattttcatttatagattccttaaccaatatcc 22019724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 31242020 - 31241952
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagaca-aaaattttatttgtagattccttaa 151  Q
    ||||||||||| || |||||| ||   |||||||||||||||| |||||| ||||| ||||||||||||    
T  31242020 aattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctatttatagattccttaa 31241952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 31991526 - 31991454
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||| || || |||| ||||| |||||||||||||  ||||| ||||| |||| |||||||||| ||||    
T  31991526 aattattactttatcaaaaataacatcttatattttcaaagcaaaatttttaattgtggattccttaaccatt 31991454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 39810771 - 39810731
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaaga 124  Q
    |||||||| ||||| |||||||||| |||||||||||||||    
T  39810771 aattattacttgatcaaaagtaacatcttatattttcaaga 39810731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 43970102 - 43970046
Alignment:
Q  96 attaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaat 152  Q
    ||||||||||||| |||||||||| |||| |||| || |||| ||| ||||||||||    
T  43970102 attaaaagtaacatcttatatttttaagataaaatttatattcgtatattccttaat 43970046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 15419 - 15358
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatcc 160  Q
    |||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  15419 aaaagtaacatcttatattttcaagacaaaaattctatttataaattccttaatcattatcc 15358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 36571 - 36650
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    ||||| ||| ||||||| || |||||||||| ||||||||||||| |||||| ||||||||| |||||| ||||||||||    
T  36571 ttgtataatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatttgaagattctttaatcatta 36650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 11676800 - 11676734
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    |||||||||| |||||||||  ||| |||||||||||||||| || |||||||||||||||||||||    
T  11676800 attatttgatcaaaagtaacgtcttttattttcaagacaaaatttatatttgtagattccttaatca 11676734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 6785858 - 6785790
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||| |||||||||| ||||||| ||||    
T  6785858 attacttgatcaaaagtaacattttatattttcaagacaaaaattctatttgtagaatccttaaccatt 6785790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 44698267 - 44698335
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||| || |||||||||| |||||||||||||||||||| || |||||||||||| ||||| ||||    
T  44698267 attattttatcaaaagtaacatcttatattttcaagacaaaatttctatttgtagatttcttaaccatt 44698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 55446789 - 55446849
Alignment:
Q  96 attaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||| |||||    
T  55446789 attaaaagtaacatcttatatttccaagacaaaatttttatttgtagattctttagtcatt 55446849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 28709682 - 28709562
Alignment:
Q  36 tattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaatttta 135  Q
    |||||||||||||| ||||||||| || ||| |||       ||||| ||| |||||||||| ||||||||||  |||||||||||||| |||| || ||    
T  28709682 tattggttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttcta 28709583  T
Q  136 tttgtagattccttaatcatt 156  Q
    ||| ||||||| |||| ||||    
T  28709582 tttatagattctttaaccatt 28709562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 635769 - 635701
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||| || |||||||||| ||||| | |||||||||||| || |||||||||||||||||| ||||    
T  635769 attatttaatcaaaagtaacatcttatttattcaagacaaaatttctatttgtagattccttaaccatt 635701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 15671185 - 15671118
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||| ||||| |||||| |||  ||||||||  |||||||||||||||||| ||||||||||||    
T  15671185 aattattacttgataaaaagtgacagtttatatttcgaagacaaaaattttatttatagattccttaa 15671118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 4020170 - 4020215
Alignment:
Q  111 ttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||||||||||||||| || |||||||||||||||||| ||||    
T  4020170 ttatattttcaagacaaaatttctatttgtagattccttaaccatt 4020215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 1712057 - 1711920
Alignment:
Q  19 aaccagtgcaccaaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattt 118  Q
    |||||||| || |||| |||||||||| || | |||||||| |||||||||        | ||| |||||||| ||  | ||| |||||| |||||||||    
T  1712057 aaccagtgtactaagggtattggttaaacaactaaaataagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaacatcttatattt 1711958  T
Q  119 tcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||||||| || || || |||||||||||| ||||    
T  1711957 tcaagacaaaatttataattttagattccttaaccatt 1711920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 12109653 - 12109762
Alignment:
Q  42 ttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgta 141  Q
    |||||||||||||| || ||| |||||||       ||||| |||||||| ||  |||||||||| | ||||||||||||| ||| || || ||||||||    
T  12109653 ttaagcatccaaaacaaacaattttttatgaaaaagttgtataattattacttagttaaaagtaatatcttatattttcaaaacataatttctatttgta 12109752  T
Q  142 gattccttaa 151  Q
    || |||||||    
T  12109753 gaatccttaa 12109762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 26613133 - 26613061
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||| |||||||||| |||||  ||||||||   ||||||||  |||||||||||||||||||| ||||    
T  26613133 aattattacttgattaaaaataacattttatatttctgagacaaaacatttatttgtagattccttaaccatt 26613061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 43652537 - 43652467
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    ||||||||| |||| |||| | |||  |||||||| ||||| | ||||||||||| |||||||||||||||    
T  43652537 aattattatctgataaaaaatgacagattatatttccaagatagaaattttatttatagattccttaatca 43652467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 36482100 - 36482169
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatta 157  Q
    |||||||||| |||||||||| ||||||||||||| |||||| || ||||||||||||| |||| |||||    
T  36482100 attatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatttgtagattcattaaccatta 36482169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 22293964 - 22294101
Alignment:
Q  19 aaccagtgcaccaaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattt 118  Q
    |||||||||  ||||| |||||||||| ||| ||||| ||| || |||||||       |||| |||| |||||||||| ||||  || | |||||||||    
T  22293964 aaccagtgccacaagggtattggttaaacattcaaaacaagtaagtttttatgaaaaagttgtgcaataattatttgatcaaaaccaatatcttatattt 22294063  T
Q  119 tcaagacaaaaattttatttgtagattccttaatcatt 156  Q
     |||||||||| || |||||||||||||||||| ||||    
T  22294064 ccaagacaaaatttctatttgtagattccttaaccatt 22294101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 30293887 - 30293824
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||| ||||| |||||||||| |||||||||| ||||||||| || ||||||||||||| ||||    
T  30293887 attacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaa 30293824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 27544644 - 27544706
Alignment:
Q  94 tgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| |||| ||||| ||||||||||||||| |||| || ||||||||||||||||| |||||    
T  27544644 tgataaaaaataacatcttatattttcaagataaaatttctatttgtagattccttagtcatt 27544706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 34346953 - 34346999
Alignment:
Q  110 cttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  34346953 cttatattttcaagacaaattttttatttgtagattccttaaccatt 34346999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 11815971 - 11816028
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||||| |||||||||||||||||||| || ||||| ||||||| |||| ||||    
T  11815971 aaaagtaacatcttatattttcaagacaaaatttctatttttagattcattaaccatt 11816028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 30840662 - 30840590
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatcc 160  Q
    |||| ||||| |||||||||| |||||||||||||||||||  || | || ||||||||||||| || |||||    
T  30840662 attacttgatcaaaagtaacatcttatattttcaagacaaattttctgttagtagattccttaaccaatatcc 30840590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 2089180 - 2089133
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaatttta 135  Q
    |||||||||| |||||||| | ||||||||| ||||||||||||||||    
T  2089180 attatttgatcaaaagtaaaatcttatatttccaagacaaaaatttta 2089133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 14863381 - 14863448
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||| ||||| |||||| |||  |||||||||||||||| ||||| ||||| ||||||| ||||    
T  14863381 aattattacttgataaaaagtgacagtttatattttcaagacataaattatatttatagattctttaa 14863448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 8151854 - 8151796
Alignment:
Q  93 ttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||||||||||| ||||||||||||| |||||| || || || || |||||||||    
T  8151854 ttgattaaaagtaacatcttatattttcaaaacaaaatttctacttataaattccttaa 8151796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 11320170 - 11320264
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatccgaaggcaccgattaacaa 178  Q
    |||||||| ||||| |||||| |||  ||||||||  |||| | |||||||| || |||||||||||| ||||| |||| ||||| | |||||||    
T  11320170 aattattacttgataaaaagtgacagtttatatttctaagatagaaattttaattatagattccttaaccattacccgagggcactggttaacaa 11320264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 18242510 - 18242551
Alignment:
Q  110 cttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  18242510 cttatattttcaagacaaaatttctacttgtagattccttaa 18242551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 3600155 - 3600227
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||||| || ||||||| | | | ||||||||||||||||||| ||||||||| ||| || ||||| ||||    
T  3600155 aattattacttaattaaaattcaaaacttatattttcaagacaaatattttatttatagttttcttaaccatt 3600227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 12187255 - 12187295
Alignment:
Q  111 ttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  12187255 ttatatttccaagacaaaaattctatttgtagattctttaa 12187295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 15139212 - 15139164
Alignment:
Q  110 cttatattttcaagacaaaaattttatttgtagattccttaatcattat 158  Q
    |||||||||||||||||||  |||||||| ||| |||||||| ||||||    
T  15139212 cttatattttcaagacaaattttttatttatagtttccttaaccattat 15139164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 30055 - 29987
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaat 152  Q
    ||||||||||| ||||||||||||| ||||||||||||| | |||  || |||||||||||||||||||    
T  30055 aattattatttaattaaaagtaacatcttatattttcaaaataaagtttctatttgtagattccttaat 29987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 16979940 - 16980061
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttat 136  Q
    ||||||||||||||||||| ||| ||||||||||       ||||   ||||||| | ||| |||||||||| |||||||||||||||||||| || ||     
T  16979940 attggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaaatttctaa 16980039  T
Q  137 ttgtagattccttaatcattat 158  Q
    ||||| |||| |||| ||||||    
T  16980040 ttgtaaattctttaaccattat 16980061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 43626337 - 43626466
Alignment:
Q  29 ccaaggatattggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaa 128  Q
    ||||||||| ||||||| |||| |||||||  ||||||||||       ||||  |||||||| || || |||| ||||| || || |||||||||||||    
T  43626337 ccaaggataatggttaaacatctaaaataaataaatttttatgaaaaaattgtgtaattattactttataaaaaataacatctaattttttcaagacaaa 43626436  T
Q  129 aattttatttgtagattccttaatcattat 158  Q
    | ||||||||| ||||| ||||||||||||    
T  43626437 atttttatttgaagatttcttaatcattat 43626466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 18037918 - 18037848
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    |||||||||||||| ||||||||||  |||||||||||| |||||| |||||||| | |||| ||||||||    
T  18037918 aattattatttgatcaaaagtaacaatttatattttcaaaacaaaatttttatttatggatttcttaatca 18037848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 18756912 - 18756978
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    |||| ||||| ||||||||||| || ||||| |||||||||| || |||||||||||||||||||||    
T  18756912 attacttgatcaaaagtaacacattttatttgcaagacaaaatttctatttgtagattccttaatca 18756978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 28004218 - 28004279
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagatt 145  Q
    |||||||||||||| ||||  || | ||||||||||||||||||||||||||||| ||||||    
T  28004218 aattattatttgatcaaaaccaaaagcttatattttcaagacaaaaattttatttttagatt 28004279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 42888342 - 42888423
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcattatc 159  Q
    |||| |||| |||| || || ||||| |||| ||||||||||||||  ||||| |||||||||||||||||||| |||||||    
T  42888342 ttgtgcaatcattactttatcaaaagcaacatcttatattttcaagttaaaaaatttatttgtagattccttaaccattatc 42888423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 19677055 - 19677107
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||||| |||||||||||||||||||| || ||||||| ||||||||||    
T  19677055 aaaagtaacatcttatattttcaagacaaaatttctatttgtcgattccttaa 19677107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 21515064 - 21515132
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaat 152  Q
    ||||||||||||||||||||||||| ||| |||||||| |  |||| || ||||| |||||||||||||    
T  21515064 aattattatttgattaaaagtaacatcttgtattttcatgttaaaatttctatttatagattccttaat 21515132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 34993146 - 34993094
Alignment:
Q  104 taacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||| ||||    
T  34993146 taacatcttatattttcaagacaaaatttatatttgtagattccttaaccatt 34993094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 43118851 - 43118923
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||| |||||||| ||| |||||| || ||||||||||||||||| || |||||||||||| ||||| ||||    
T  43118851 aattactatttgatcaaatgtaacatctcatattttcaagacaaaatttatatttgtagatttcttaaccatt 43118923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 157
Target Start/End: Complemental strand, 1309839 - 1309719
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttat 136  Q
    ||||||||| ||||||||||||  ||||||||||       ||||  |||  ||||||||| |||||||||   ||||||||| |||| |||| || |||    
T  1309839 attggttaaacatccaaaataaataaatttttatgaaaaaattgtgtaatagttatttgataaaaagtaacgtattatatttttaagataaaatttctat 1309740  T
Q  137 ttgtagattccttaatcatta 157  Q
    ||||||||||||||| |||||    
T  1309739 ttgtagattccttaaccatta 1309719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 8896656 - 8896594
Alignment:
Q  94 tgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||| |||||||||| |||||||||| ||||||||| || ||||||||||||| |||| ||||    
T  8896656 tgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattctttaaacatt 8896594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 28012890 - 28012949
Alignment:
Q  94 tgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    |||| |||| ||||| |||||||||||||||| |||||||||||| ||||||| |||||||    
T  28012890 tgatcaaaaataacagcttatattttcaagac-aaaattttatttttagattcattaatca 28012949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 5871234 - 5871308
Alignment:
Q  78 ttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatc 153  Q
    ||||| |||||||| ||||||||| |||||| |||||||||| || || ||| || ||||| ||||||||||||||    
T  5871234 ttgtataattattacttgattaaacgtaacaacttatattttgaa-accaaatttctatttatagattccttaatc 5871308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 8117512 - 8117449
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattcc 147  Q
    ||||||||||| || |||| |||||  |||||||||||||||| ||||| ||||| ||||||||    
T  8117512 aattattatttaataaaaaataacaatttatattttcaagacataaattctatttatagattcc 8117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 16685721 - 16685845
Alignment:
Q  29 ccaaggatattggttaagcatccaaaataagcaaattttta-tnnnnnnnttgtacaattattatttgattaaa-agtaacaccttatattttcaagaca 126  Q
    |||| |||||||||||||||||||||||||| || |||||| |       ||||  ||| |||| ||||| ||| ||||||| |||||||||  ||||||    
T  16685721 ccaaagatattggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagaca 16685820  T
Q  127 aaaattttatttgtagattccttaa 151  Q
    ||| || |||| |||||||||||||    
T  16685821 aaacttctattagtagattccttaa 16685845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 17659957 - 17660081
Alignment:
Q  29 ccaaggatattggttaagcatccaaaataagcaaattttta-tnnnnnnnttgtacaattattatttgattaaa-agtaacaccttatattttcaagaca 126  Q
    |||| |||||||||||||||||||||||||| || |||||| |       ||||  ||| |||| ||||| ||| ||||||| |||||||||  ||||||    
T  17659957 ccaaagatattggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagaca 17660056  T
Q  127 aaaattttatttgtagattccttaa 151  Q
    ||| || |||| |||||||||||||    
T  17660057 aaacttctattagtagattccttaa 17660081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 31249568 - 31249619
Alignment:
Q  94 tgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagatt 145  Q
    |||| |||||||||| |||||||||||||||||||| || ||||| ||||||    
T  31249568 tgatcaaaagtaacatcttatattttcaagacaaaatttatatttatagatt 31249619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 45907102 - 45907035
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaa 151  Q
    |||||||| ||||| |||||| |||  |||||||| ||||||||||| | ||||| ||||||||||||    
T  45907102 aattattacttgataaaaagtgacagtttatatttacaagacaaaaaatctatttatagattccttaa 45907035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 18221102 - 18220987
Alignment:
Q  37 attggttaagcatccaaaataagcaaattttt-atnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaatttta 135  Q
    |||||||||||||  ||||||||||| ||||| ||       ||||| |||||||| || || ||| |||||| ||||||||| |||| ||||| || ||    
T  18221102 attggttaagcatttaaaataagcaagttttttatgaaaaagttgtataattattacttaatcaaatgtaacatcttatatttccaagtcaaaacttcta 18221003  T
Q  136 tttgtagattccttaa 151  Q
    || |||||||||||||    
T  18221002 ttagtagattccttaa 18220987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 31850812 - 31850762
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaaaattttattt 138  Q
    ||||||| ||||||||||||| |||||||||  ||||||||| ||||||||    
T  31850812 attattttattaaaagtaacatcttatatttctaagacaaaatttttattt 31850762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 34993196 - 34993151
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaa 129  Q
    ||||||||||| || |||||||||| |||||||||| |||||||||    
T  34993196 aattattattttatcaaaagtaacatcttatatttttaagacaaaa 34993151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 39786520 - 39786448
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    ||||||||||| || |||||| | | ||||||||||||||||||   || ||||| |||||||||||| ||||    
T  39786520 aattattatttaatcaaaagttaaaacttatattttcaagacaagttttctatttatagattccttaaccatt 39786448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 41434746 - 41434814
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaat 152  Q
    |||||||||||||| |||||| |||  ||||||||  |||||| ||||| ||||| ||||||| |||||    
T  41434746 aattattatttgataaaaagtgacagtttatatttctaagacagaaattatatttatagattctttaat 41434814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 120729 - 120786
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatcatt 156  Q
    |||||| ||| |||||||||||||||||||| || |||||||||||||||||| ||||    
T  120729 aaaagtgacatcttatattttcaagacaaaatttctatttgtagattccttaaccatt 120786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 51644 - 51772
Alignment:
Q  37 attggttaagcatccaaaataagcaaatttttatnnnnnnnttgtacaattattatttgattaaaagtaacaccttatattttcaagacaaaaattttat 136  Q
    ||||||||| ||||||||||||  ||||||||||       || |  ||| |||| || || ||||||||||  ||||||||  ||||||||||||||||    
T  51644 attggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttat 51743  T
Q  137 ttgtagattccttaatcattatccgaagg 165  Q
    ||||| ||||||||| |||| ||| ||||    
T  51744 ttgtaaattccttaaccattgtcctaagg 51772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 3385 - 3431
Alignment:
Q  99 aaaagtaacaccttatattttcaagacaaaaattttatttgtagatt 145  Q
    ||||||||||  ||||||||||||||||||| |||||||| ||||||    
T  3385 aaaagtaacattttatattttcaagacaaaatttttatttatagatt 3431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 22492 - 22422
Alignment:
Q  84 aattattatttgattaaaagtaacaccttatattttcaagacaaaaattttatttgtagattccttaatca 154  Q
    |||||||||||||| |||||| ||   |||||||| ||| |||||| || ||||| |||||||||||||||    
T  22492 aattattatttgataaaaagtgacggtttatatttccaacacaaaagttatatttatagattccttaatca 22422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 7408 - 7448
Alignment:
Q  88 attatttgattaaaagtaacaccttatattttcaagacaaa 128  Q
    |||||||||| |||||||| | |||||||||||||||||||    
T  7408 attatttgatcaaaagtaatatcttatattttcaagacaaa 7448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University