View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21234_high_8 (Length: 252)
Name: NF21234_high_8
Description: NF21234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21234_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 39849505 - 39849261
Alignment:
| Q |
8 |
aggagcagagaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatg |
107 |
Q |
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| T |
39849505 |
aggagtagagaggaaagtaaatattcaatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatg |
39849406 |
T |
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| Q |
108 |
atacatataacatgtatgtattgatgttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcatcttctgagagggcgatttt |
207 |
Q |
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| T |
39849405 |
atacatataacatgtaagtattgatgttcagcctacgctgtttgatacaaaatacacaagtgaatatacttatatatgcatcttctgagagggcgatttt |
39849306 |
T |
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| Q |
208 |
atgctagagtggtgagagtaaacccttatcatacaggcaggcata |
252 |
Q |
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| T |
39849305 |
atggtagagtggtgagagtaaacccttatcatacaggcaggcata |
39849261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 3981494 - 3981351
Alignment:
| Q |
20 |
gaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaactcaatcacatatgatacatataaca |
119 |
Q |
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| T |
3981494 |
gaaagtaaatattagatgcattgcatatggttaacaaataaaccaaccataagtagtctactgaagataagcaactccacataatataaaacacataaca |
3981395 |
T |
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| Q |
120 |
tgtatgtattgatgttcagcctacgctgtttgatacaaaataca |
163 |
Q |
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| T |
3981394 |
tgtaagtatttatcttcatcctacgttgtttgatacataataca |
3981351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 33973277 - 33973436
Alignment:
| Q |
8 |
aggagcagagaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaag--actagtaactcaatcacata |
105 |
Q |
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| T |
33973277 |
aggagtagagaggaaagtaaatacttgatgtattgaatttgatgaacacataaaccaatcgtaagtagtctactgaagacacacgtaactctacaacaga |
33973376 |
T |
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| Q |
106 |
tg--atacatataacatgtatgtattgatgttcagcctacgctgtttgatacaaaataca |
163 |
Q |
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| T |
33973377 |
tggaacatatataacatgtaagtattgatgcgcagcccacgctgtttgatacataataca |
33973436 |
T |
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