View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21234_high_9 (Length: 247)

Name: NF21234_high_9
Description: NF21234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21234_high_9
NF21234_high_9
[»] chr2 (7 HSPs)
chr2 (81-232)||(36444969-36445119)
chr2 (1-65)||(10163551-10163615)
chr2 (1-65)||(3668048-3668112)
chr2 (1-58)||(34392127-34392183)
chr2 (1-58)||(23863849-23863905)
chr2 (1-40)||(4779654-4779692)
chr2 (1-60)||(41095830-41095888)
[»] chr5 (9 HSPs)
chr5 (1-65)||(38010652-38010716)
chr5 (1-65)||(13478083-13478147)
chr5 (1-65)||(29990031-29990095)
chr5 (1-63)||(13421050-13421112)
chr5 (1-65)||(13015450-13015514)
chr5 (5-65)||(13086826-13086886)
chr5 (1-59)||(37881210-37881268)
chr5 (1-58)||(1826328-1826384)
chr5 (1-38)||(9827857-9827894)
[»] chr3 (8 HSPs)
chr3 (1-65)||(47186244-47186308)
chr3 (1-65)||(31187108-31187172)
chr3 (5-65)||(42664746-42664806)
chr3 (1-65)||(34029329-34029393)
chr3 (1-54)||(47426419-47426471)
chr3 (13-57)||(6023027-6023071)
chr3 (1-58)||(33509749-33509805)
chr3 (1-50)||(44380323-44380371)
[»] chr6 (3 HSPs)
chr6 (1-65)||(34245636-34245700)
chr6 (1-58)||(1211890-1211946)
chr6 (1-53)||(32644888-32644938)
[»] chr4 (9 HSPs)
chr4 (1-65)||(52012847-52012911)
chr4 (5-65)||(47943232-47943292)
chr4 (1-65)||(9799401-9799465)
chr4 (1-58)||(21260863-21260919)
chr4 (1-58)||(33249420-33249476)
chr4 (17-65)||(46720200-46720249)
chr4 (1-58)||(12473773-12473829)
chr4 (1-58)||(12528182-12528238)
chr4 (1-58)||(22343406-22343462)
[»] chr1 (4 HSPs)
chr1 (1-65)||(8809678-8809742)
chr1 (16-65)||(35998336-35998385)
chr1 (1-58)||(29119370-29119426)
chr1 (1-58)||(32676205-32676261)
[»] chr8 (5 HSPs)
chr8 (1-50)||(18168454-18168503)
chr8 (1-50)||(18632011-18632060)
chr8 (1-65)||(1514872-1514936)
chr8 (1-58)||(4708353-4708409)
chr8 (1-58)||(24337876-24337932)
[»] chr7 (1 HSPs)
chr7 (1-50)||(32694624-32694672)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 36445119 - 36444969
Alignment:
Q  81 cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatannnnnnncactcacgttacgggactctaaacaaggtaggtagtctgcatg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||    
T  36445119 cacaatattggaccttgtttagacacgagtggaccaattcatcgtctatatttttt-cactcacattacgggactctaaacaaggtaggtagtctgcatg 36445021  T
Q  181 tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445020 tcacttgaatcaatccaaacttaattatatggacaaattggaactagtttat 36444969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10163551 - 10163615
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  10163551 ttactttataaataatttatttgatatatgttttttaaagtatgtgctacatggcataccttaat 10163615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3668112 - 3668048
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    ||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  3668112 ttactttataagtgctttattttatatatgttttttaaagtgagtgccacatggcacatcttaat 3668048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34392183 - 34392127
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  34392183 ttactttataaatgctttatttgatatat-ttttttaaagggtgtgccacatggcaca 34392127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23863905 - 23863849
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    ||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||    
T  23863905 ttactttataaatgctttatttgatatat-atttttaaagggtgtgccacatggcaca 23863849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4779654 - 4779692
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaag 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4779654 ttactttataaatactttatttgatatat-ttttttaaag 4779692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41095888 - 41095830
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacacc 60  Q
    ||||||||||||| |||||||||||| || |||||||||  || ||||||||||||||||    
T  41095888 ttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacacc 41095830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38010716 - 38010652
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38010716 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 38010652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13478147 - 13478083
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13478147 ttactttataaatattttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaat 13478083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29990031 - 29990095
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29990031 ttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaat 29990095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13421112 - 13421050
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacacctta 63  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  13421112 ttactttataaatgctttatttaatatatgttttttaaagtgtatgccacatgacacacctta 13421050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13015450 - 13015514
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||| ||||||    
T  13015450 ttactttataaatattttatttgatatatattttttaaagtatgtgccacatgtcacatcttaat 13015514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 13086826 - 13086886
Alignment:
Q  5 tttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  13086826 tttataaatattttatttgatatgtattttttaaagtgtgtgccacatgtcacaccttaat 13086886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37881210 - 37881268
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacac 59  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  37881210 ttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatggtacac 37881268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1826328 - 1826384
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    ||||||| || || ||||||||||||||| ||||||||||| ||||||||||||||||    
T  1826328 ttactttgtagatgctttatttgatatat-ttttttaaagtatgtgccacatggcaca 1826384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9827857 - 9827894
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaa 38  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  9827857 ttactttataaatattttatttgatatatcttttttaa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47186244 - 47186308
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186244 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 47186308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31187172 - 31187108
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  31187172 ttactttataaatgttttatttgatatatattttttaaagtgtgtgccacatgtcacaccttaat 31187108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 42664746 - 42664806
Alignment:
Q  5 tttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42664746 tttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaat 42664806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34029393 - 34029329
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  34029393 ttactttataaatgttttatttgatatatgttttttaaagtgtgtgtcacatatcacaccttaat 34029329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47426419 - 47426471
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatgg 54  Q
    |||||||||| || ||||||||||||||| |||||||||| |||||||||||||    
T  47426419 ttactttatagatgctttatttgatatat-ttttttaaagggtgtgccacatgg 47426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 6023027 - 6023071
Alignment:
Q  13 tactttatttgatatatgttttttaaagtgtgtgccacatggcac 57  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  6023027 tactttatttgatatatattttttaaagggtgtgccacgtggcac 6023071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33509749 - 33509805
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||| || ||||||||||| ||| ||||||||||  ||||||||||||||||    
T  33509749 ttactttatagatgctttatttgatgtat-ttttttaaaggatgtgccacatggcaca 33509805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44380323 - 44380371
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 50  Q
    ||||||||||||| ||||||||||||||  |||||||||| |||||||||    
T  44380323 ttactttataaatgctttatttgatata-cttttttaaagggtgtgccac 44380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34245636 - 34245700
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34245636 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaat 34245700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1211946 - 1211890
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||  || ||||||||||||||| |||||||||| ||||||||| |||||||    
T  1211946 ttactttatcgatgctttatttgatatat-ttttttaaagggtgtgccacgtggcaca 1211890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 32644938 - 32644888
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatg 53  Q
    |||||||| |||||||||||||| ||||| |||||||||| ||||||||||||    
T  32644938 ttacttta-aaatactttatttgttatat-ttttttaaagggtgtgccacatg 32644888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 52012847 - 52012911
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52012847 ttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaat 52012911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 47943232 - 47943292
Alignment:
Q  5 tttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  47943232 tttataaatattttatttgatatatgttttttaaaatgtgtgccacatgtcacaccttaat 47943292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9799465 - 9799401
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  9799465 ttactttataaatgttttatttaatatatgttttttaaagtgtgtgtcacatgtcacaccttaat 9799401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21260863 - 21260919
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||||||||||||||    
T  21260863 ttactttataaatgttttatttgatatat-ttttttaaagggtgtgccacatggcaca 21260919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33249476 - 33249420
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    ||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||    
T  33249476 ttactttataaatgctttatttgatatat-atttttaaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 46720200 - 46720249
Alignment:
Q  17 ttatttgatatatgtttt-ttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaat 46720249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12473773 - 12473829
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||| || ||||||||||||||| |||||||||| ||||| |||||| ||||    
T  12473773 ttactttatagatgctttatttgatatat-ttttttaaagggtgtggcacatgacaca 12473829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12528182 - 12528238
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||| || ||||||||||||||| |||||||||| ||||| |||||| ||||    
T  12528182 ttactttatagatgctttatttgatatat-ttttttaaagggtgtggcacatgacaca 12528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22343406 - 22343462
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    ||||||||||||| ||||||||||||||| | ||||||||  ||||||||||| ||||    
T  22343406 ttactttataaatgctttatttgatatat-tattttaaaggatgtgccacatgacaca 22343462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8809742 - 8809678
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8809742 ttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaat 8809678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 35998336 - 35998385
Alignment:
Q  16 tttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  35998336 tttattttatatatgttttttaaagtgtgtgccacatggcacatcttaat 35998385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29119426 - 29119370
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||| || ||||||||||||||| |||||||||| |||||||||||||||||    
T  29119426 ttactttatagatgctttatttgatatat-ttttttaaagggtgtgccacatggcaca 29119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32676205 - 32676261
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    ||||||||||||| ||||||||||||||| ||||||||||  ||||||||||||||||    
T  32676205 ttactttataaatgctttatttgatatat-ttttttaaagcatgtgccacatggcaca 32676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18168454 - 18168503
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 50  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  18168454 ttactttataaatactttatttgatatattttttttaaaggatgtgccac 18168503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18632011 - 18632060
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 50  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  18632011 ttactttataaatactttatttgatatattttttttaaaggatgtgccac 18632060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1514872 - 1514936
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaat 65  Q
    |||||||||||||  |||||||||||||| ||||||||| ||||| ||| ||| |||||||||||    
T  1514872 ttactttataaatgttttatttgatatatattttttaaaatgtgtaccatatgtcacaccttaat 1514936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4708409 - 4708353
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||||||  ||||||||||||||  ||||||||| ||||||||| |||||||    
T  4708409 ttactttataaatgttttatttgatatat-atttttaaagggtgtgccacgtggcaca 4708353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24337932 - 24337876
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcaca 58  Q
    |||||||||| || |||||||||||||||  ||||||||| ||||||||||| |||||    
T  24337932 ttactttatagatgctttatttgatatat-atttttaaagggtgtgccacatagcaca 24337876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32694672 - 32694624
Alignment:
Q  1 ttactttataaatactttatttgatatatgttttttaaagtgtgtgccac 50  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  32694672 ttactttataaattctttatttgatatat-ttttttaaagggtgtgccac 32694624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University