View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21234_low_1 (Length: 720)
Name: NF21234_low_1
Description: NF21234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21234_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 20 - 696
Target Start/End: Original strand, 28430648 - 28431329
Alignment:
| Q |
20 |
cacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggacttggtcatatggctgtgaaattt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430648 |
cacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggacttggtcatatggctgtgaaattt |
28430747 |
T |
|
| Q |
120 |
gccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctgactcatttgttgttagca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28430748 |
gccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctgactcatttgtggttagca |
28430847 |
T |
|
| Q |
220 |
gtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttgaattctttttaggcttaattatcctattctcatagaaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430848 |
gtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttcaattctttttaggcttaattatcctattctcatagaaac |
28430947 |
T |
|
| Q |
320 |
ggaccttcataatcgaccgaaatttgaactcaagttcaattaagatagaattaattccaatcactcgagttcggttgttacatgattactagatccctct |
419 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430948 |
ggaccttgataatcgaccgaaatttgaactcaagttcaattaagatagaattaactccaatcactcgagttcggttgttacatgattactagatccctct |
28431047 |
T |
|
| Q |
420 |
aaaaactaacgaaat---nnnnnnnnttacatgaaggtgacaatacattta--tttattagcttgaaaccaaacacatttataatgtctccttctttcta |
514 |
Q |
| |
|
||| ||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28431048 |
aaagactaacgaaataaataaaaaatttacatgaaggtgaccatacatttatttttattagcttgaaaccaaacacatttataatgtctccttcttttta |
28431147 |
T |
|
| Q |
515 |
tttaggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaact |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28431148 |
tttaggctgcaacgggcaccttggatggtatcattgacacagtttctgccgtccatcctttgttacctttgattggtcttttgaaatctcatggaaaact |
28431247 |
T |
|
| Q |
615 |
tgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagcacatgcaaaataataca |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28431248 |
tgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagctcatgcaaaataataca |
28431329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 5e-58; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 13373217 - 13373003
Alignment:
| Q |
27 |
tatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaag |
126 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||| || || | ||||||||||||||||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
13373217 |
tatagccctttgaaatattttggacttaacaagcctggtttacatgtgggtgtggttggtcttggtggattaggtcatatggctgtgaaatttaccaaag |
13373118 |
T |
|
| Q |
127 |
cttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctgactcatttgttgttagcagtgaaca |
226 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||||| ||||| |
|
|
| T |
13373117 |
cttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggagctgactcatttgtggttagccacgaaca |
13373018 |
T |
|
| Q |
227 |
agatcaaatgcaggt |
241 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
13373017 |
agaccaaatgcaggt |
13373003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 13379016 - 13378823
Alignment:
| Q |
24 |
gtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgcca |
123 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| |||||| |||| ||||||||||||||||||||||| | ||||||||||||||||| || |||| |
|
|
| T |
13379016 |
gtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttggtcttggtggattaggtcatatggctgtgaagttcgcca |
13378917 |
T |
|
| Q |
124 |
aagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctgactcatttgttgttag |
217 |
Q |
| |
|
|||| ||||||| ||||||||| ||| | || |||||||||||||||||||||||||| ||||||| | |||||||||||||| || ||||| |
|
|
| T |
13378916 |
aagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgcttaggagctgactcattcgtggttag |
13378823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 13426312 - 13426150
Alignment:
| Q |
81 |
gttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaag |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || || |||| |||| | ||||||| |
|
|
| T |
13426312 |
gttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaag |
13426213 |
T |
|
| Q |
181 |
ctattgaacttcttggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggtat |
243 |
Q |
| |
|
| || |||| | | ||||||||||| ||| | || ||| | || | |||||| |||||||||| |
|
|
| T |
13426212 |
cgatagaacatttaggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat |
13426150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 13413084 - 13412976
Alignment:
| Q |
73 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaa |
172 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||| || || ||||||||| | |
|
|
| T |
13413084 |
taggtgttgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaaga |
13412985 |
T |
|
| Q |
173 |
gaaggaagc |
181 |
Q |
| |
|
|||||||| |
|
|
| T |
13412984 |
aaaggaagc |
13412976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 13389318 - 13389426
Alignment:
| Q |
73 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaa |
172 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||| || || || |||||| | |
|
|
| T |
13389318 |
taggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaaga |
13389417 |
T |
|
| Q |
173 |
gaaggaagc |
181 |
Q |
| |
|
||| ||||| |
|
|
| T |
13389418 |
gaaagaagc |
13389426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 13385499 - 13385605
Alignment:
| Q |
75 |
ggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaaga |
174 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| || ||| ||| |||| | | |
|
|
| T |
13385499 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaa |
13385598 |
T |
|
| Q |
175 |
aggaagc |
181 |
Q |
| |
|
||||||| |
|
|
| T |
13385599 |
aggaagc |
13385605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 13446972 - 13446914
Alignment:
| Q |
81 |
gttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13446972 |
gttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaa |
13446914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 13419429 - 13419297
Alignment:
| Q |
73 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaa |
172 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || || || ||||| || || ||| ||||| | |
|
|
| T |
13419429 |
taggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaaga |
13419330 |
T |
|
| Q |
173 |
gaaggaagctattgaacttcttggagctgactc |
205 |
Q |
| |
|
|||||||| || |||| | ||||||||||| |
|
|
| T |
13419329 |
aaaggaagcaatagaacacttgggagctgactc |
13419297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 517 - 669
Target Start/End: Complemental strand, 13453579 - 13453427
Alignment:
| Q |
517 |
taggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttg |
616 |
Q |
| |
|
||||||||||||| || ||||||||||| | ||||||||||| || | ||||| | |||||| |||||||| | || || ||||||||||| |||| |
|
|
| T |
13453579 |
taggctgcaacggctactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttg |
13453480 |
T |
|
| Q |
617 |
ttatggttggtgcacctgagaagcctctggagctaccagtatttcctttactt |
669 |
Q |
| |
|
| ||||||||||||||||| |||||||| ||||| || || |||||||||||| |
|
|
| T |
13453479 |
taatggttggtgcacctgaaaagcctctagagcttcctgtttttcctttactt |
13453427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 13453933 - 13453867
Alignment:
| Q |
73 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
139 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
13453933 |
taggtgttgttggtcttggtggacttggccatatggccgtgaaattcgccaaagctttcggtgctaa |
13453867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 13393733 - 13393894
Alignment:
| Q |
81 |
gttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaag |
180 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||||| ||||||||||| ||||| |||||||| ||||| || || || |||||| |||| |||| |
|
|
| T |
13393733 |
gttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaag |
13393832 |
T |
|
| Q |
181 |
ctattgaacttcttggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggta |
242 |
Q |
| |
|
| || ||| || |||||||| |||||| || | || ||| |||||| ||||||||||| |
|
|
| T |
13393833 |
caatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggta |
13393894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 595 - 679
Target Start/End: Original strand, 13385827 - 13385911
Alignment:
| Q |
595 |
ctgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc |
679 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| |||||| |||||||||||| | || || ||||||||| || ||||||||| |
|
|
| T |
13385827 |
ctgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctctggagatccccgtctttcctttaattttgggtaagc |
13385911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 596 - 679
Target Start/End: Original strand, 13389654 - 13389737
Alignment:
| Q |
596 |
tgaaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagc |
679 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||| |||||| ||||| | || || ||||||||| || ||||||||| |
|
|
| T |
13389654 |
tgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagc |
13389737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 598 - 680
Target Start/End: Original strand, 13411373 - 13411455
Alignment:
| Q |
598 |
aaatctcatggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca |
680 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| || ||||||||||| ||| |||||| || |||||||| |||||||||| |
|
|
| T |
13411373 |
aaatctcatggaaagcttgtattggttggtgccccagagaagcctcttgagttaccagcatggcctttactagtgggtaagca |
13411455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 680
Target Start/End: Complemental strand, 13378591 - 13378516
Alignment:
| Q |
605 |
atggaaaacttgttatggttggtgcacctgagaagcctctggagctaccagtatttcctttacttatgggtaagca |
680 |
Q |
| |
|
|||| ||||||||||||||||| || || ||||||||| ||||| | ||||||||| |||| || |||||||||| |
|
|
| T |
13378591 |
atggtaaacttgttatggttggagctccagagaagcctttggagtttccagtattttctttgattgtgggtaagca |
13378516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 628
Target Start/End: Complemental strand, 13412808 - 13412715
Alignment:
| Q |
535 |
ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtg |
628 |
Q |
| |
|
||||||||||| ||||||||||||| || || |||||| | ||||| |||||||||| |||| ||||||||||| ||| | ||| |||||| |
|
|
| T |
13412808 |
ttggatggtattattgacacagtttcagctgttcatcctctcttaccaatgattggtctcttgaagtctcatggaaagcttataatgcttggtg |
13412715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 47601283 - 47601154
Alignment:
| Q |
41 |
atattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaag |
140 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| |
|
|
| T |
47601283 |
atattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggacttggtcacatggctgttaagtttgctaaagcttttggggctaat |
47601184 |
T |
|
| Q |
141 |
gtaacagtgattagcacttctcctaacaaa |
170 |
Q |
| |
|
|| || || ||||| || || ||||||||| |
|
|
| T |
47601183 |
gtgactgtaattagtacatcacctaacaaa |
47601154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 650
Target Start/End: Complemental strand, 47600976 - 47600861
Alignment:
| Q |
535 |
ttggatggtatcgttgacacagtttccgccgtccatcctttgttacctttgattggtcttctgaaatctcatggaaaacttgttatggttggtgcacctg |
634 |
Q |
| |
|
|||||||||||| ||||||||||||| || | |||||| | | |||| | ||||| | ||||| ||||||||||||||||| ||||||||||| || | |
|
|
| T |
47600976 |
ttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccag |
47600877 |
T |
|
| Q |
635 |
agaagcctctggagct |
650 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47600876 |
cgaagcctctggagct |
47600861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University