View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_high_1 (Length: 1058)

Name: NF21235_high_1
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_high_1
NF21235_high_1
[»] chr2 (13 HSPs)
chr2 (20-1047)||(3219712-3220735)
chr2 (221-598)||(15985303-15985677)
chr2 (602-910)||(12504720-12505032)
chr2 (602-910)||(14680894-14681206)
chr2 (733-910)||(39587451-39587646)
chr2 (965-1018)||(12505091-12505144)
chr2 (965-1018)||(14680782-14680835)
chr2 (965-1018)||(39587705-39587758)
chr2 (1012-1047)||(12505163-12505198)
chr2 (1012-1047)||(14680728-14680763)
chr2 (1012-1047)||(39587777-39587812)
chr2 (42-79)||(15985932-15985969)
chr2 (137-196)||(15985680-15985738)
[»] chr1 (9 HSPs)
chr1 (607-914)||(52887707-52888022)
chr1 (602-910)||(52608987-52609299)
chr1 (607-909)||(29886958-29887263)
chr1 (965-1018)||(52608875-52608928)
chr1 (965-1018)||(52888077-52888130)
chr1 (776-880)||(13728701-13728805)
chr1 (974-1018)||(29887332-29887376)
chr1 (1012-1047)||(29887395-29887430)
chr1 (1013-1047)||(52608821-52608855)
[»] scaffold0014 (6 HSPs)
scaffold0014 (602-910)||(173513-173825)
scaffold0014 (602-910)||(143719-144031)
scaffold0014 (965-1018)||(173884-173937)
scaffold0014 (965-1018)||(144090-144143)
scaffold0014 (1012-1047)||(144162-144197)
scaffold0014 (1012-1047)||(173956-173991)
[»] chr8 (9 HSPs)
chr8 (602-910)||(44197897-44198209)
chr8 (607-910)||(20793444-20793751)
chr8 (602-910)||(23928942-23929254)
chr8 (293-599)||(23729106-23729406)
chr8 (965-1018)||(23928830-23928883)
chr8 (965-1018)||(44198268-44198321)
chr8 (965-1012)||(20793810-20793857)
chr8 (1012-1047)||(23928776-23928811)
chr8 (1012-1047)||(44198340-44198375)
[»] chr7 (15 HSPs)
chr7 (602-910)||(48513409-48513721)
chr7 (602-910)||(48727851-48728163)
chr7 (602-910)||(3718203-3718514)
chr7 (635-910)||(42105178-42105457)
chr7 (965-1018)||(42105516-42105569)
chr7 (965-1018)||(48513297-48513350)
chr7 (965-1018)||(48727739-48727792)
chr7 (965-1018)||(3718091-3718144)
chr7 (1012-1047)||(3718037-3718072)
chr7 (1012-1047)||(42105588-42105623)
chr7 (1012-1047)||(48513243-48513278)
chr7 (782-834)||(34529808-34529860)
chr7 (782-834)||(45574882-45574934)
chr7 (1012-1047)||(48727685-48727720)
chr7 (785-834)||(17990443-17990492)
[»] chr6 (3 HSPs)
chr6 (602-910)||(29651774-29652086)
chr6 (965-1018)||(29652145-29652198)
chr6 (1013-1047)||(29652218-29652252)
[»] chr5 (12 HSPs)
chr5 (602-910)||(36678940-36679252)
chr5 (602-910)||(36662526-36662838)
chr5 (602-880)||(23203822-23204100)
chr5 (653-910)||(43560199-43560465)
chr5 (965-1018)||(36662897-36662950)
chr5 (965-1018)||(36678828-36678881)
chr5 (965-1018)||(43560524-43560577)
chr5 (965-1018)||(23198573-23198626)
chr5 (1012-1047)||(36662969-36663004)
chr5 (1013-1047)||(36678774-36678808)
chr5 (879-910)||(23198685-23198716)
chr5 (1014-1047)||(23198519-23198552)
[»] chr3 (10 HSPs)
chr3 (602-910)||(38327668-38327980)
chr3 (602-910)||(46073352-46073662)
chr3 (602-910)||(55488644-55488956)
chr3 (965-1018)||(38327556-38327609)
chr3 (965-1018)||(46073721-46073774)
chr3 (965-1018)||(55489015-55489068)
chr3 (1012-1047)||(46073793-46073828)
chr3 (1012-1047)||(55489087-55489122)
chr3 (1013-1047)||(38327502-38327536)
chr3 (782-834)||(35029014-35029066)
[»] scaffold1284 (2 HSPs)
scaffold1284 (653-910)||(143-409)
scaffold1284 (965-1018)||(468-521)
[»] chr4 (1 HSPs)
chr4 (647-834)||(56288593-56288780)
[»] scaffold0318 (1 HSPs)
scaffold0318 (602-804)||(19891-20093)


Alignment Details
Target: chr2 (Bit Score: 994; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 994; E-Value: 0
Query Start/End: Original strand, 20 - 1047
Target Start/End: Original strand, 3219712 - 3220735
Alignment:
Q  20 ggctcatgggtgcgacacgacgaaaccccattttgcattgaagtttagagtagcactactgatagtggtcagatagcgctgcagtaaagctcatgtaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219712 ggctcatgggtgcgacacgacgaaaccccattttgcattgaagtttagagtagcactactgatagtggtcagatagcgctgcagtaaagctcatgtaaaa 3219811  T
Q  120 aattctaaactttttgcaatatcatcatttccccccacttgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagac 219  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219812 --ttctaaactttttgcaatatcatcatttccccccacttgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagac 3219909  T
Q  220 tgccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccct 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3219910 tgccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccct 3220009  T
Q  320 tttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatgg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220010 tttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatgg 3220109  T
Q  420 tatatcttgtgtgtactggaaaaaccgtaagatgtagatgtgcatcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaagg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220110 tatatcttgtgtgtactggaaaaaccgtaagatgtagatgtgcatcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatcaagg 3220209  T
Q  520 tcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacagtattgacaagtgatttgttaaaagcttcaaacgagta 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3220210 tcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacagtattgacaagtgatttgttaaaagct--aaacgagta 3220307  T
Q  620 gtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctc 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3220308 gtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacaaaaacggtgaaatttgtgatttcacctc 3220407  T
Q  720 agattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctg 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220408 agattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctg 3220507  T
Q  820 gattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagca 919  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220508 gattctttcaacgatttagccttcgctgctttcgcgattcgttctccttcgccactcgtggtttgggatgagattcatagttactgcttcatgcaaagca 3220607  T
Q  920 aagaatcttgctcttcccatagttagtgcttcacacgaacgcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctc 1019  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220608 aagattcttgctcttcccatagttagtgcttcacacgaacgcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctc 3220707  T
Q  1020 acagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||    
T  3220708 acagggacctaattgaagttgttcttga 3220735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 221 - 598
Target Start/End: Complemental strand, 15985677 - 15985303
Alignment:
Q  221 gccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccctt 320  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||| |||||| ||||||| | |||||    
T  15985677 gccatcctcaccttgtggctttccagcagccctttctacaacaaaatgctatccgtgcatcagagctatttagtcaaagatattgagcagcggcgccctt 15985578  T
Q  321 ttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcctattttatccactttcaactttgcatggt 420  Q
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||| |||||||| |||| | |||||||||||||||||||||    
T  15985577 cgcatgttgttttccttgtatggactacctataaaatattcatcgattcatgatcggagtttaggttctccaatttgacccactttcaactttgcatggt 15985478  T
Q  421 atatcttgtgtgtactggaaaaaccgtaagatgtagatgtgcatcatatcatgaacctgataactcctctgctttggtctttttaagtagtaatc-aagg 519  Q
     |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||  || || ||||||||||| ||||    
T  15985477 ctatcttgtgtgtactggaaaaaccatcagatgtagatgtgcatcatatcatgcacctgataactcctctgatttgaactcttgaagtagtaatcaaagg 15985378  T
Q  520 tcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacagtattgacaagtgattt 598  Q
    | ||||||||||||||||||||| ||||||||||| ||| |||||||||    |||| |||||||||||||||||||||    
T  15985377 ttgatccctcaaataagcaagtcttgtcctaagtgtgacgattgccagc----tcagccacagtattgacaagtgattt 15985303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 12504720 - 12505032
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  12504720 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 12504819  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  12504820 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 12504919  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  12504920 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 12505019  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  12505020 agttactgcttca 12505032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 14681206 - 14680894
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  14681206 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 14681107  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  14681106 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 14681007  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  14681006 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 14680907  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  14680906 agttactgcttca 14680894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 733 - 910
Target Start/End: Original strand, 39587451 - 39587646
Alignment:
Q  733 ttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaag--------------aacaagattctttgctctgcacct 818  Q
    |||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||              |||||||||| |||||||||||||    
T  39587451 ttatctcacagatgcagcgcgcgaagctggaacggagaatcttgcttacactgaatgggaagaacaagattcgaagaacaagattcattgctctgcacct 39587550  T
Q  819 ggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact----cgtggtttgggatgagattcatagttactgcttca 910  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| |||||||||       ||||||||||||||| |||| |||||||||||    
T  39587551 ggattctttcaacgatttcgccttcgctactttcgcgattcgttctcattcgccacttagggcaggtttgggatgagatccataattactgcttca 39587646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 12505091 - 12505144
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12505091 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 12505144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 14680835 - 14680782
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  14680835 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 14680782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 39587705 - 39587758
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  39587705 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 39587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 12505163 - 12505198
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  12505163 agtctctcacagggacctaattgaagttgttcttga 12505198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Complemental strand, 14680763 - 14680728
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  14680763 agtctctcacagggacctaattgaagttgttcttga 14680728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 39587777 - 39587812
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  39587777 agtctctcacagggacctaattgaagttgttcttga 39587812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 15985969 - 15985932
Alignment:
Q  42 aaaccccattttgcattgaagtttagagtagcactact 79  Q
    |||||||||||||||||||||||||||||||| |||||    
T  15985969 aaaccccattttgcattgaagtttagagtagcgctact 15985932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 15985738 - 15985680
Alignment:
Q  137 aatatcatcatttccccccacttgcggctttccaatggctctttctgcaacctttccagg 196  Q
    ||||||||| ||||||||  |||||||||||||| |||| |||||||||||||||| |||    
T  15985738 aatatcatcgtttccccct-cttgcggctttccattggccctttctgcaacctttcaagg 15985680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 607 - 914
Target Start/End: Original strand, 52887707 - 52888022
Alignment:
Q  607 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 706  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||    
T  52887707 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaatgaagatggtgaaattt 52887806  T
Q  707 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcg----cgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagat 802  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  52887807 gtgatttcacctgagattccaccggtttatctcacagttgcagcgcgcgcacgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagat 52887906  T
Q  803 tctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcata 898  Q
    || ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||| ||||    
T  52887907 tcattgctctgcacctggattctttcaacgatttcgccttcactactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccata 52888006  T
Q  899 gttactgcttcatgca 914  Q
    ||||||||||||||||    
T  52888007 gttactgcttcatgca 52888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 52609299 - 52608987
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  52609299 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 52609200  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  52609199 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 52609100  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  52609099 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 52609000  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  52608999 agttactgcttca 52608987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 607 - 909
Target Start/End: Original strand, 29886958 - 29887263
Alignment:
Q  607 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 706  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||||||    
T  29886958 cttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 29887057  T
Q  707 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctt 806  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |    
T  29887058 gtgatttcgcctgagattccaccggtttatctcaca-atgcagcgcgcgaagcaggaacggagaatcctgcttacactgaatgggaagaacaagattcat 29887156  T
Q  807 tgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagtta 902  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||    
T  29887157 tgctctgcacctggattctttcaacgatttcaccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccatagtta 29887256  T
Q  903 ctgcttc 909  Q
    |||||||    
T  29887257 ctgcttc 29887263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 52608928 - 52608875
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52608928 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52608875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 52888077 - 52888130
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52888077 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52888130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 776 - 880
Target Start/End: Original strand, 13728701 - 13728805
Alignment:
Q  776 gcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccact 875  Q
    |||||||| ||||||||||||||||||||| | || ||||| |||||| | ||||| |||| | |||| ||||||||||| ||||| || || || ||||    
T  13728701 gcttacaccgaatgggaagaacaagattctctcctttgcacatggattttatcaactatttcgtcttctctgctttcgcgtttcgtgcttctccgtcact 13728800  T
Q  876 cgtgg 880  Q
    |||||    
T  13728801 cgtgg 13728805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 974 - 1018
Target Start/End: Original strand, 29887332 - 29887376
Alignment:
Q  974 tgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  29887332 tgtcgccgaattcattgctcgaattcgcgcaatttcagagtctct 29887376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 29887395 - 29887430
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  29887395 agtctctcacagggacctaattgaagttgttcttga 29887430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1013 - 1047
Target Start/End: Complemental strand, 52608855 - 52608821
Alignment:
Q  1013 gtctctcacagggacctaattgaagttgttcttga 1047  Q
    |||||||||||||||||||||||||||||||||||    
T  52608855 gtctctcacagggacctaattgaagttgttcttga 52608821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 173513 - 173825
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  173513 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 173612  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  173613 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 173712  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  173713 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 173812  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  173813 agttactgcttca 173825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 143719 - 144031
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  143719 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 143818  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  143819 aatttgtgatttcacctgagattccatcggtttatctcacagatgcagcgtgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 143918  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| |||||| |||||||||||||||||||||| | |||||| || |||||||| ||||||||||||| |||||| |    ||||||||||||||| |||    
T  143919 ttcattgctcagcacctggattctttcaacgatctcgccttcgctactttcgcggttcgttctccttctccactcttggcaggtttgggatgagatccat 144018  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  144019 agttactgcttca 144031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 173884 - 173937
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  173884 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 144090 - 144143
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  144090 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 144143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 144162 - 144197
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  144162 agtctctcacagggacctaattgaagttgttcttga 144197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 173956 - 173991
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  173956 agtctctcacagggacctaattgaagttgttcttga 173991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 44197897 - 44198209
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  44197897 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 44197996  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  44197997 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 44198096  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  44198097 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 44198196  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  44198197 agttactgcttca 44198209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 607 - 910
Target Start/End: Original strand, 20793444 - 20793751
Alignment:
Q  607 cttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaattt 706  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  20793444 cttcaaacaagtagtttctgttaagcttgatgatacaaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtgaaattt 20793543  T
Q  707 gtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctt 806  Q
    |||||||||||| | ||||||| ||||||||||||||||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| |    
T  20793544 gtgatttcacctgatattccacaggtttatctcacagatgcagcgcgcgaagctggaacggagaatcatgcttacactgaatgggaagaacaagattcat 20793643  T
Q  807 tgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagtta 902  Q
    |||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||    
T  20793644 tgctctgcacctggattctttcaacgatatcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagtta 20793743  T
Q  903 ctgcttca 910  Q
    ||||||||    
T  20793744 ctgcttca 20793751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 23929254 - 23928942
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||    
T  23929254 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgcggaacgaagatggtga 23929155  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||| |||||||||||| |||||| | || |||||||||||||||||||||||||||||    
T  23929154 aatttgtgatttcacctgatattccactgatttatctcacagatgcagcgcgcgaagctggaacggataatcctgcttacactgaatgggaagaacaaga 23929055  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| |||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  23929054 ttcattgctctgcacctgaattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 23928955  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  23928954 agttactgcttca 23928942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 293 - 599
Target Start/End: Original strand, 23729106 - 23729406
Alignment:
Q  293 gtcaaggatattaagcagcgacacccttttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcct 392  Q
    |||||||| ||| |||||| |  ||||||||||||||||| |||||| | |  |||||| ||| || |||| ||||||||||||||||| |||||||||     
T  23729106 gtcaaggaaattgagcagcaatgcccttttcatgttgtttgccttgtgtgggttacctacaaagtactcattgattcgtgatcagatttagggttctccc 23729205  T
Q  393 attttatccactttcaactttgcatgg-tatatcttgt-gtgtactg-gaaaaaccgtaagatgtagatgtgcatcatatcatgaacctgataactcctc 489  Q
    | |  | |||||||| ||||||||||| | ||| |||| |||   |  ||||||||    ||||||||||||     ||||||| ||||| | ||||||     
T  23729206 actacacccactttccactttgcatgggtctatattgtagtgcgatcagaaaaaccacctgatgtagatgtg-----tatcatgcacctggtgactccta 23729300  T
Q  490 tgctttggtctttttaagtagtaatcaaggtcgatccctcaaataagcaagtcctgtcctaagtgagactattgccagctcagtcagtcacagtattgac 589  Q
    ||| ||||||| ||  ||| |||| ||| || |||| ||||||||||||||| |||||||||||| ||||||||||||||| | |   ||||||||||||    
T  23729301 tgccttggtctcttacagtggtaaccaatgttgatctctcaaataagcaagttctgtcctaagtgtgactattgccagctc-gac---cacagtattgac 23729396  T
Q  590 aagtgatttg 599  Q
    ||||||||||    
T  23729397 aagtgatttg 23729406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 23928883 - 23928830
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  23928883 ttcacgcactgtcgctgaattcattgctcgaattcgcacaatttcagagtctct 23928830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 44198268 - 44198321
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  44198268 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 44198321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 965 - 1012
Target Start/End: Original strand, 20793810 - 20793857
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcaga 1012  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20793810 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcaga 20793857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Complemental strand, 23928811 - 23928776
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  23928811 agtctctcacagggacctaattgaagttgttcttga 23928776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 44198340 - 44198375
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  44198340 agtctctcacagggacctaattgaagttgttcttga 44198375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 48513721 - 48513409
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  48513721 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48513622  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  48513621 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 48513522  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  48513521 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 48513422  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  48513421 agttactgcttca 48513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 48728163 - 48727851
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||    
T  48728163 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatggtga 48728064  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||| |||||| |||| |||||||||||| ||||||||||||||||    
T  48728063 aatttgtgatttcacctgagattccaccggtttatctcacacatgcagcgcgcaaagctggaacggagaatcctgcttacactaaatgggaagaacaaga 48727964  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  48727963 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 48727864  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  48727863 agttactgcttca 48727851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 3718514 - 3718203
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| | |||||| ||| |||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||| |||||| | |||||    
T  3718514 aaaaccttcaaacaactagtttctgtcaagcttgatgatacaaactacctttaatggaagcaacaagtcgaaggtgttct-cgcggaacgaagatggtga 3718416  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  3718415 aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacgaagaatcctgcttacaccgaatgggaagaacaaga 3718316  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||    ||||||||||||||| ||     
T  3718315 ttcattgctctgcacctggattctttcaacgattttgccttcgctactttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagatccac 3718216  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  3718215 agttactgcttca 3718203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 635 - 910
Target Start/End: Original strand, 42105178 - 42105457
Alignment:
Q  635 gatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggttt 734  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  42105178 gatgatacgaactaccttcaatggaagcaacaagttgaaggtgttcttcgtggaacgaagatggtgaaatttgtgatttcacctgagattccaccggttt 42105277  T
Q  735 atctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 834  Q
    |||||||||||| |||||||||||| |||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42105278 atctcacagatgcagcgcgcgaagctggaaccgagaatcctgcttacactgaatgggaagaacaagattcattgctctgcacctggattctttcaacgat 42105377  T
Q  835 ttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 910  Q
    || |||||  || ||||||||||||||||||||||||||||| |    ||||||||||||||| ||||||||||||||||    
T  42105378 ttcgccttggctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccatagttactgcttca 42105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 42105516 - 42105569
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42105516 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 42105569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 48513350 - 48513297
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  48513350 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 48513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 48727792 - 48727739
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  48727792 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 48727739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 3718144 - 3718091
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  3718144 ttcacgcactgtcgttgaattcattgctcgaattcacgcaatttcagagtctct 3718091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Complemental strand, 3718072 - 3718037
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  3718072 agtctctcacagggacctaattgaagttgttcttga 3718037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 42105588 - 42105623
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  42105588 agtctctcacagggacctaattgaagttgttcttga 42105623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Complemental strand, 48513278 - 48513243
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  48513278 agtctctcacagggacctaattgaagttgttcttga 48513243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 834
Target Start/End: Complemental strand, 34529860 - 34529808
Alignment:
Q  782 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 834  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  34529860 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 34529808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 834
Target Start/End: Complemental strand, 45574934 - 45574882
Alignment:
Q  782 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 834  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  45574934 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 45574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Complemental strand, 48727720 - 48727685
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    |||||||||||||| |||||||||||||||||||||    
T  48727720 agtctctcacagggtcctaattgaagttgttcttga 48727685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 785 - 834
Target Start/End: Original strand, 17990443 - 17990492
Alignment:
Q  785 gaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 834  Q
    ||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  17990443 gaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 17990492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 29651774 - 29652086
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  29651774 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 29651873  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  29651874 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 29651973  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  29651974 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 29652073  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  29652074 agttactgcttca 29652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 29652145 - 29652198
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29652145 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 29652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1013 - 1047
Target Start/End: Original strand, 29652218 - 29652252
Alignment:
Q  1013 gtctctcacagggacctaattgaagttgttcttga 1047  Q
    |||||||||||||||||||||||||||||||||||    
T  29652218 gtctctcacagggacctaattgaagttgttcttga 29652252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 36679252 - 36678940
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36679252 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36679153  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  36679152 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 36679053  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  36679052 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 36678953  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  36678952 agttactgcttca 36678940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 36662526 - 36662838
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  36662526 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 36662625  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  36662626 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 36662725  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  36662726 ttcattgctctgcacctggattctttcaacgatttcggcttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 36662825  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  36662826 agttactgcttca 36662838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 602 - 880
Target Start/End: Complemental strand, 23204100 - 23203822
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  23204100 aaaaccttcaaacaagtactttctgttaagcttgattatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 23204001  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| ||| || | |||||||||| |||| |||| ||||||||||||||||||||| ||    
T  23204000 aatttgtgatttcacctgagattccaccggtttatctcataaatgcagcacgtggagcaggaacggagaatcctgtttacactgaatgggaagaacacga 23203901  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg 880  Q
    ||  ||||||| ||||||||||||||||||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  23203900 ttaattgctctacacctggattctttcaacgatttcgcctttgctactttcgcgattcgttctccttcgccactcgtgg 23203822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 653 - 910
Target Start/End: Original strand, 43560199 - 43560465
Alignment:
Q  653 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 752  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  43560199 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 43560297  T
Q  753 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 846  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  43560298 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 43560397  T
Q  847 gctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 910  Q
     |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  43560398 actttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 43560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 36662897 - 36662950
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  36662897 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 36662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 36678881 - 36678828
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  36678881 ttcacgcactgtctctgaattcattgctcgaattcgcgcaatttcagagtctct 36678828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 43560524 - 43560577
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  43560524 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 43560577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 23198626 - 23198573
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| |||||||||||||| || ||||||||||||||||    
T  23198626 ttcacgcactgtcgctgaattcattgctcgaatttgcacaatttcagagtctct 23198573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 36662969 - 36663004
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  36662969 agtctctcacagggacctaattgaagttgttcttga 36663004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1013 - 1047
Target Start/End: Complemental strand, 36678808 - 36678774
Alignment:
Q  1013 gtctctcacagggacctaattgaagttgttcttga 1047  Q
    |||||||||||||||||||||||||||||||||||    
T  36678808 gtctctcacagggacctaattgaagttgttcttga 36678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 879 - 910
Target Start/End: Complemental strand, 23198716 - 23198685
Alignment:
Q  879 ggtttgggatgagattcatagttactgcttca 910  Q
    ||||||||||||||||||||||||||||||||    
T  23198716 ggtttgggatgagattcatagttactgcttca 23198685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1014 - 1047
Target Start/End: Complemental strand, 23198552 - 23198519
Alignment:
Q  1014 tctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||| ||||||||||||||||||||||||||    
T  23198552 tctctcatagggacctaattgaagttgttcttga 23198519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 602 - 910
Target Start/End: Complemental strand, 38327980 - 38327668
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  38327980 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 38327881  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  38327880 aatttgtgatttcacctgatattccaccggtttttctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 38327781  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |    ||||||||||||||| |||    
T  38327780 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctccttcgccactcatggcaggtttgggatgagatccat 38327681  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  38327680 agttactgcttca 38327668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 46073352 - 46073662
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | | |||    
T  46073352 aaaaccttcaaacaagtagtttctgttaagcttgatgatacgaactaccttcaatggaaacaacaagtcgaaggtgttcttcgcggaacgaagatgttga 46073451  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  46073452 aatttgtgatttcacctgagattcca--ggtttatctcacagatgcagcgcgcgaagctggaacggagaatcctgcttacactgaatgggaagaacaaga 46073549  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtgg----tttgggatgagattcat 897  Q
    ||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||||| |||    ||||||||||||| |||    
T  46073550 ttcattgctctgcacctggattctttcaacgatttcgccttcgctactttcgcgattcgttctcctttgccactcatggcagatttgggatgagatccat 46073649  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  46073650 agttactgcttca 46073662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 602 - 910
Target Start/End: Original strand, 55488644 - 55488956
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||    
T  55488644 aaaaccttcaaacaagtagtttctattaagcttgatgatacgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcggaacgaagatggtga 55488743  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  55488744 aatttgtgatttcacctgagattccaccggtttatctcacagatgcagcacgcgaagctggaacggagaattctgcttacactgaatgggaagaacaaga 55488843  T
Q  802 ttctttgctctgcacctggattctttcaacgatttagccttcactgctttcgcgattcgttctccttcgccactcgtggt----ttgggatgagattcat 897  Q
    ||| ||||||||||||||| ||||||||||||||| |||||| || |||||||| ||||||||||||||||||||||||     |||||||||||| ||     
T  55488844 ttcattgctctgcacctgggttctttcaacgatttcgccttcgctactttcgcggttcgttctccttcgccactcgtggcaggcttgggatgagatccac 55488943  T
Q  898 agttactgcttca 910  Q
    |||||||||||||    
T  55488944 agttactgcttca 55488956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 965 - 1018
Target Start/End: Complemental strand, 38327609 - 38327556
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  38327609 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 38327556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 46073721 - 46073774
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  46073721 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaaattcagagtctct 46073774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 55489015 - 55489068
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  55489015 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttctgagtctct 55489068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 46073793 - 46073828
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  46073793 agtctctcacagggacctaattgaagttgttcttga 46073828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1012 - 1047
Target Start/End: Original strand, 55489087 - 55489122
Alignment:
Q  1012 agtctctcacagggacctaattgaagttgttcttga 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  55489087 agtctctcacagggacctaattgaagttgttcttga 55489122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1013 - 1047
Target Start/End: Complemental strand, 38327536 - 38327502
Alignment:
Q  1013 gtctctcacagggacctaattgaagttgttcttga 1047  Q
    |||||||||||||||||||||||||||||||||||    
T  38327536 gtctctcacagggacctaattgaagttgttcttga 38327502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 834
Target Start/End: Complemental strand, 35029066 - 35029014
Alignment:
Q  782 actgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 834  Q
    |||||||||||||| |||||||| |||||||| || ||||||||||| |||||    
T  35029066 actgaatgggaagagcaagattcgttgctctgtacgtggattctttccacgat 35029014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 152; Significance: 6e-80; HSPs: 2)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 653 - 910
Target Start/End: Original strand, 143 - 409
Alignment:
Q  653 caatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgc 752  Q
    ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |    
T  143 caatggaagcaacaa-tcgaaggtgttcttcgcggaacgaagatggtgaaatttgcgatttcacctgagattccaccggtttatctcacagatgcagcac 241  T
Q  753 gcgaagcaggaacgaagaaacctgcttacactgaatggg------aagaacaagattctttgctctgcacctggattctttcaacgatttagccttcact 846  Q
     ||||||||||||| |||| |||||||||||||||| ||      ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  242 acgaagcaggaacggagaatcctgcttacactgaattggaagaacaagaacaagattcattgctctgcacctggattctttcaatgatttcgccttcgct 341  T
Q  847 gctttcgcgattcgttctccttcgccactcgt----ggtttgggatgagattcatagttactgcttca 910  Q
     |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  342 actttcgcgattcgttctccttcgccactcgtggcaggtttgggatgagattcatagttactccttca 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 965 - 1018
Target Start/End: Original strand, 468 - 521
Alignment:
Q  965 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 1018  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  468 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 647 - 834
Target Start/End: Complemental strand, 56288780 - 56288593
Alignment:
Q  647 taccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtgaaatttgtgatttcacctcagattccaccggtttatctcacagatg 746  Q
    |||||||||||||| ||||| |||||||| ||| | ||||  ||||| | |||||||  |||  |||| || |||||||||||||| |||||||| || |    
T  56288780 taccttcaatggaaacaacaggtcgaaggagttttgcgcggtacgaagatggtgaaacatgtcgtttcgccgcagattccaccggtgtatctcaccgacg 56288681  T
Q  747 aagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaagattctttgctctgcacctggattctttcaacgat 834  Q
      || ||||  || |||||| |||| || || || || ||||||||||||||||||||| |||| || || |||||||| || |||||    
T  56288680 ctgctcgcgccgccggaacggagaatccggcgtataccgaatgggaagaacaagattctctgctgtgtacatggattctctccacgat 56288593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 602 - 804
Target Start/End: Complemental strand, 20093 - 19891
Alignment:
Q  602 aaaagcttcaaacgagtagtttatgttaagcttgatgatatgaactaccttcaatggaagcaacaagtcgaaggtgttcttcgcgaaacgaaaacggtga 701  Q
    |||| ||||||||  ||||||| ||| |||||| |||||   ||||||||  |||||||||| ||||| ||||||||  | || | ||  |||| |||||    
T  20093 aaaaccttcaaacaggtagtttttgtgaagcttcatgattcaaactacctctaatggaagcagcaagtagaaggtgtgttgcgaggaagaaaaatggtga 19994  T
Q  702 aatttgtgatttcacctcagattccaccggtttatctcacagatgaagcgcgcgaagcaggaacgaagaaacctgcttacactgaatgggaagaacaaga 801  Q
    ||||| || |||| || || ||||||||||||||||||| | |||  || |||||||| |||| | | || ||||| ||  ||||||||||||| |||||    
T  19993 aatttatggtttctccacaaattccaccggtttatctcaaacatgtcgctcgcgaagctggaatggaaaaccctgcgtattctgaatgggaagagcaaga 19894  T
Q  802 ttc 804  Q
    |||    
T  19893 ttc 19891  T

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