View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_high_11 (Length: 536)
Name: NF21235_high_11
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 442
Target Start/End: Complemental strand, 32874861 - 32874463
Alignment:
| Q |
24 |
tgaaagaataaattacaagtatactcccacttgtttttatcaattttcaaatatttttgttctaaaacaacttgaacaactaatggataagattatatat |
123 |
Q |
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| T |
32874861 |
tgaaagagtaaattacaagtatactctcacttgtttttatcaattttcaaatatttttgttctaaaacaacttgaacaactaatggataagattatatat |
32874762 |
T |
|
| Q |
124 |
gtaattgtaattgaattatatatattttctttaaaaaataatccttctagctgtttgctttttaaacgtgtcttccagagcatgtccttagtagtttttc |
223 |
Q |
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| T |
32874761 |
gtaattgtaattgaattatatatattttctttaaaaaataatccttctagctgtttgctttttaaacgtgtcttccagagcatgtccttagtagtttttc |
32874662 |
T |
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| Q |
224 |
tttttaaataatattcataattataaatgcaacctctaaattttacgattatacacaatggcaatgtcagattagcatataaagttgtcttttgtcgttg |
323 |
Q |
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| T |
32874661 |
tttttaaataatattcataattataaatgcaacctctaaattttacgattttacacaatggcaatgtcagattagcatataaagttgtcttttgtcgttg |
32874562 |
T |
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| Q |
324 |
ttagtgcaacctgctcctcttataagtcttctaacaattctaaattttatacatatgtatttgttgtttaataatatttattttatagaagcctcttttt |
423 |
Q |
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| T |
32874561 |
ttagtgcaacctg---ctcttataagtcttctaacaattctaaattttatacatatg-----------------tatttattttatagaagcctcttttt |
32874482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 32874450 - 32874406
Alignment:
| Q |
481 |
tcatataatacatgacatgcttattttgttaccactctaagtatt |
525 |
Q |
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| T |
32874450 |
tcatataatacatgacatgcttattttgttaccactctaagtatt |
32874406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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