View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_high_13 (Length: 475)
Name: NF21235_high_13
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 38488051 - 38487595
Alignment:
| Q |
1 |
tagacgagccatcgaaacaacaccatgccaaattatgcagcgctgcaaaactggtctaaatacttgagcaatcaataacataccccagcctgtgggaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38488051 |
tagacgagccatcgaaacaacaccatgccaaattatgcagcgctgcaaaactggcctaaatacttgagcaatcaataacataccccagcctgtgggaatg |
38487952 |
T |
|
| Q |
101 |
aatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaagtatcacaaatatggcaaaaactatgacaagtgactgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487951 |
aatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaagtatcacaaatatggcaaaaactatgacaagtgactgaa |
38487852 |
T |
|
| Q |
201 |
tcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccacataaataccaaacacaacaacaacataaatccatgatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38487851 |
tcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccacataaataccaaacacgacaacaacataaatccatgatag |
38487752 |
T |
|
| Q |
301 |
caagtaaacaactatgctggtacttcctgcagctatgtcgagctggtagacaataccgtactggaagacgaagaaacggaggtctaaaattatctccata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487751 |
caagtaaacaactatgctggtacttcctgcagctatgccgagctggtagacaataccgtactggaagacgaagaaacggaggtctaaaattatctccata |
38487652 |
T |
|
| Q |
401 |
agctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccacttt |
457 |
Q |
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| T |
38487651 |
agctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccacttt |
38487595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 62 - 454
Target Start/End: Complemental strand, 30122389 - 30121997
Alignment:
| Q |
62 |
acttgagcaatcaataacataccccagcctgtgggaatgaatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaa |
161 |
Q |
| |
|
||||| |||||||||| || ||||| |||||||||| |||||| ||||| |||||||||| |||| ||||||||||| |||||||||| |||||||| |
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| T |
30122389 |
acttgggcaatcaatagcaggccccatcctgtgggaaggaatgccaacaagctagtaaaaatatccacgaatttgaattctgtgaattccagcaaagcaa |
30122290 |
T |
|
| Q |
162 |
gtatcacaaatatggcaaaaactatgacaagtgactgaatcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccac |
261 |
Q |
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||||| || ||| |||| || ||||||||| |||||| | | ||||||||| || | ||| || ||||| |||| |||||| ||||||| | |
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| T |
30122289 |
ctatcagaagtattgcaagaattatgacaaggaactgaacaagccggtaatagatatgctctttcgccgaatatttgttccgtgcatacactaccacggc |
30122190 |
T |
|
| Q |
262 |
ataaataccaaacacaacaacaacataaatccatgatagcaagtaaacaactatgctggtacttcctgcagctatgtcgagctggtagacaataccgtac |
361 |
Q |
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|||||| ||| | |||||||||||||||||||||||||||||||| ||| | || || || |||| |||| || | || ||||| ||||| || ||| |
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| T |
30122189 |
ataaatcccagatacaacaacaacataaatccatgatagcaagtatacagcaatactattatttccagcagaaattccaagttggtaaacaattccatac |
30122090 |
T |
|
| Q |
362 |
tggaagacgaagaaacggaggtctaaaattatctccataagctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccac |
454 |
Q |
| |
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||||| | |||||| || |||||||| ||||| |||| |||||||||||||| || ||| ||||||||||||| |||||||| ||||||||| |
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| T |
30122089 |
tggaaaaagaagaagcgaaggtctaagattatttccaaaagctttccccaaaggccggttacctttagatgatcctgctcttcataccaccac |
30121997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 434
Target Start/End: Original strand, 22218348 - 22218405
Alignment:
| Q |
377 |
cggaggtctaaaattatctccataagctttccccaaaatcctgttccctttagatgat |
434 |
Q |
| |
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|||||||||||||| |||| || ||||||||||||||| | ||| |||||||||||| |
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| T |
22218348 |
cggaggtctaaaatcatctgcacaagctttccccaaaacctggttacctttagatgat |
22218405 |
T |
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