View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_high_15 (Length: 415)
Name: NF21235_high_15
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 24773443 - 24773043
Alignment:
| Q |
1 |
aggataagcgttaaccattaaataagaaccggtttgacgtagaaactcgagcatcggtttaataactggttcaacaagttcggttttgaatgaaccggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |
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| T |
24773443 |
aggataagcgttaaccattaaataagaaccggtttgacttagaaactcgagcatcggtttaataaccggttcaacaagttcagttttgaatgaaccggtt |
24773344 |
T |
|
| Q |
101 |
gaggtagggtaagaagattgtaaagcagagagtgctatgggtgaagagattaaaatctgtttatctaggttttgtttttggagagaagcatgaacgtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773343 |
gaggtagggtaagaagattgtaaagcagagagagctattggtgaagagattaaaatctgtttatctaggttttgtttttggagagaagcatgaacgtttt |
24773244 |
T |
|
| Q |
201 |
tcatggcgggtacgagatagttggtcgtgtttttcgggtctacgaaaacctcgtttccgacagaaatggcttcgatttgtgtggcggggtagtggttaag |
300 |
Q |
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| T |
24773243 |
tcatggcgggtacgagatagttggtcgtgtttttcgggtctacgaaaacctcgtttccgacagcaatggcttcgatttctgtggcggggtagtggttaag |
24773144 |
T |
|
| Q |
301 |
gatgttggattggatccatgtgtcggtgtaggattggtcggctgcggccgaggagagaagctcgtttggcatggcaacggtgactttgatgccggagttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24773143 |
gatgttggattggatccatgtgtcggtgtaggattggtcggctgcggccgaggagagaagctcgtttggcatggcaacggtgactttgatgccggagttt |
24773044 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
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| |
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| T |
24773043 |
g |
24773043 |
T |
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