View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_high_18 (Length: 377)
Name: NF21235_high_18
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 6807954 - 6808305
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6807954 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
6808053 |
T |
|
| Q |
111 |
ctgtatatagtattaatgagaatttactttcaacggtgcttaaaatttggattggattgttttccttctcgtgtttgctactcactctgcgtattgttat |
210 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||| |
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| T |
6808054 |
ctgtatatagtattaatgagaaattactttcaacggtgcttaaaatttggattggattgttttccatctcgggtttgttactcactctgcgtattcttat |
6808153 |
T |
|
| Q |
211 |
ttggacaattaatgattactatctcaataaaggtaaaggtcaatcaaaaggaaacaactccaccgaagattccactctcttgatttgatcgtacaatctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808154 |
ttggacaattaatgattactatctcaataaaggtgaaggtcaatcaaaaggaaacaactccaccgaagattccactctcttgatttgatcgtacaatctt |
6808253 |
T |
|
| Q |
311 |
caattacgactataattagtgtgctaggtgttgagatttgtatgtttaaatt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808254 |
caattacgactataattagtgtgctaggtgttgagatttgtatgtttaaatt |
6808305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 6835893 - 6836219
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
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||||||||||||||||||||||| ||||| | |||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6835893 |
cataggtttactatgtggcttttttctattagcatgtgtttcactctcacatctcttcttgttacttaccgaatagcaatattaatggttaccccagatc |
6835992 |
T |
|
| Q |
111 |
ctgtatatagtattaatgagaatttactttcaacggtgcttaaaatttggattggattgttttccttctcgtgtttgctactcactctgcgtattgttat |
210 |
Q |
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| T |
6835993 |
ctgtctgggctgataatgaggttttactttcaacattgcttcgtatttggattggattgttttctttctcgggtttcttactcacactgcgtattattat |
6836092 |
T |
|
| Q |
211 |
ttggacaattaatgattactatctcaataaaggtaaaggtcaatcaaaaggaaacaactccaccgaagattccactctcttgatttgatcgtacaatctt |
310 |
Q |
| |
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|||| ||||| ||||| | |||| |||||| || | | |||||| ||| |||||| || |||| ||| | ||||||||||| |||||||||| |
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| T |
6836093 |
ttggggaattagtgatttc---gtcaaaaaaggtgaatg----taaaaaggcaaccactccaatgatgattgcacccgcttgatttgattgtacaatctt |
6836185 |
T |
|
| Q |
311 |
caattacgactataattagtgtgctaggtgttga |
344 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
6836186 |
taattacgactataattagtgtgttaggtgttga |
6836219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 6636336 - 6636438
Alignment:
| Q |
234 |
tcaataaaggtaaaggtcaatcaaaaggaaacaactccaccgaagattccactctcttgatttgatcgtacaatcttcaattacgactataattagtgtg |
333 |
Q |
| |
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||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
6636336 |
tcaataaaggtgaaggtcagtcaaaaggaaaccactccaccgaagattccacactcttgatttgatcgtgcaatctttaattacgactataattagtgtg |
6636435 |
T |
|
| Q |
334 |
cta |
336 |
Q |
| |
|
||| |
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|
| T |
6636436 |
cta |
6636438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 6632732 - 6633062
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||| |||||| || |||| ||||||||||| |
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| T |
6632732 |
cataggtttactatgtggcttgtatctatagggatgtgtttcactctcacatctcttcttgttacttacgacatagcagtaggaatgattaccccagata |
6632831 |
T |
|
| Q |
111 |
ctgtatatagtattaatgagaatttactttcaacggtgcttaaaatttggattggattgttttccttctcgtgtttgctactcactctgcgtattgttat |
210 |
Q |
| |
|
| | | | || | |||| ||||||||| ||||| | |||||||| |||||||||||||||||| ||||| ||||||| ||||||||| |||| |
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|
| T |
6632832 |
ttctctgggatgatacgttggattttctttcaacgttgctttatatttggatgggattgttttccttctcgggtttgttactcacactgcgtattattat |
6632931 |
T |
|
| Q |
211 |
ttggacaattaatgattactatctcaataaaggtaaaggtcaatcaaaaggaaac--aactccaccgaagattccactctcttgatttgatcgtacaatc |
308 |
Q |
| |
|
|||| ||||| ||||| | ||||||||| || ||||| | ||| | |||| ||||||| | |||| |||| | |||||||| ||||||||||| |
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| T |
6632932 |
ttggggaattagtgatttc---ctcaataaacgtgaaggtaa---aaaggcaaacagaactccaacaaagactccaaccccttgatttaatcgtacaatc |
6633025 |
T |
|
| Q |
309 |
ttcaattacgactataattagtgtgctaggtgttgag |
345 |
Q |
| |
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|| |||| ||||||||||||||||| ||| ||||||| |
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| T |
6633026 |
tttaatttcgactataattagtgtgttagatgttgag |
6633062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 6633942 - 6634045
Alignment:
| Q |
11 |
cataggtttactatgtggcttttatctatggggatgtctttcactctaacaactcttcttgttacttacagaatagcaatattaatggttaccccagatc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
6633942 |
cataggtttactatgtggcttttttctattagcatgtgtttcactctcacatctcttcttgttacttaccgaatagcaatattaatggttaccccagttc |
6634041 |
T |
|
| Q |
111 |
ctgt |
114 |
Q |
| |
|
|||| |
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|
| T |
6634042 |
ctgt |
6634045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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