View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_high_26 (Length: 325)
Name: NF21235_high_26
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 1630240 - 1629944
Alignment:
| Q |
22 |
aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacag |
121 |
Q |
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| T |
1630240 |
aatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacag |
1630141 |
T |
|
| Q |
122 |
caggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatact |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630140 |
caggtgagttatattccatctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatact |
1630041 |
T |
|
| Q |
222 |
tgaggctttctta----catacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
314 |
Q |
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| T |
1630040 |
tgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
1629944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 154 - 314
Target Start/End: Original strand, 10820598 - 10820754
Alignment:
| Q |
154 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
253 |
Q |
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|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || | |
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| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
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| Q |
254 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
314 |
Q |
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| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcat |
10820754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 1607244 - 1607121
Alignment:
| Q |
22 |
aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1607244 |
aatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacag |
1607145 |
T |
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| Q |
122 |
caggtgagttatattccatctcct |
145 |
Q |
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||||||| ||||||| ||| |||| |
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| T |
1607144 |
caggtgaattatatttcatttcct |
1607121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 1624265 - 1624142
Alignment:
| Q |
22 |
aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1624265 |
aatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacag |
1624166 |
T |
|
| Q |
122 |
caggtgagttatattccatctcct |
145 |
Q |
| |
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||||||| ||||||| ||| |||| |
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| T |
1624165 |
caggtgaattatatttcatttcct |
1624142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 10820039 - 10820160
Alignment:
| Q |
22 |
aatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacag |
121 |
Q |
| |
|
||||| || |||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10820039 |
aatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacag |
10820138 |
T |
|
| Q |
122 |
caggtgagttatattccatctc |
143 |
Q |
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| |||||||||||||||||||| |
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| T |
10820139 |
ccggtgagttatattccatctc |
10820160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 1606689 - 1606646
Alignment:
| Q |
271 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcat |
1606646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 18785292 - 18785179
Alignment:
| Q |
21 |
caatgacaatattatgctggttggtgatggtatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaaca |
120 |
Q |
| |
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|||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18785292 |
caatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaaca |
18785193 |
T |
|
| Q |
121 |
gcaggtgagttata |
134 |
Q |
| |
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|||||||| ||||| |
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| T |
18785192 |
gcaggtgaattata |
18785179 |
T |
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