View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_high_27 (Length: 320)

Name: NF21235_high_27
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_high_27
NF21235_high_27
[»] chr6 (1 HSPs)
chr6 (19-313)||(30616532-30616822)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 30616532 - 30616822
Alignment:
Q  19 cctgcttggtttctccatgtcaaactgcaaaatgcaaatttcaaacaacaaacaataacaatctaaaactttgatacatctttcttaatcaaaaaattag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30616532 cctgcttggtttctccatgtcaaactgcaaaatgcaaatttcaaacaacaaacaataacaatctaaaactttgatacatctttcttaatcaaaaaattag 30616631  T
Q  119 ttttgatcatnnnnnnnnnnnnnnncaatcacaatcttagtactattatattatttatgtttcatctttttgtatgatgctgtttaatggctagtatcct 218  Q
    ||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30616632 ttttgatcataaaaacaacaa----caatcacaatcttagtactattatattatttatgtttcatctttttgtatgatgctgtttaatggctagtatcct 30616727  T
Q  219 tgtactcaaattagaattaaacttttccttttaattatgacaaaaaattcaaaatgcaaatatatatcaatgccaacaaatacttagaataatct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30616728 tgtactcaaattagaattaaacttttccttttaattatgacaaaaaattcaaaatgcaaatatatatcaatgccaacaaatacttagaattatct 30616822  T

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