View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_high_33 (Length: 246)

Name: NF21235_high_33
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_high_33
NF21235_high_33
[»] chr6 (1 HSPs)
chr6 (11-246)||(1016194-1016423)
[»] chr7 (1 HSPs)
chr7 (150-203)||(37775993-37776046)
[»] chr3 (1 HSPs)
chr3 (147-197)||(9210826-9210876)
[»] chr8 (2 HSPs)
chr8 (144-197)||(16987917-16987970)
chr8 (144-203)||(1979417-1979477)
[»] chr4 (2 HSPs)
chr4 (147-203)||(33950144-33950200)
chr4 (140-204)||(36768843-36768907)
[»] chr2 (1 HSPs)
chr2 (140-196)||(18622416-18622472)
[»] chr1 (3 HSPs)
chr1 (144-204)||(18556020-18556080)
chr1 (145-197)||(31667431-31667483)
chr1 (147-191)||(43609825-43609869)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 1016194 - 1016423
Alignment:
Q  11 cacagacgaaacgaatgtaatcacatgtgtcgttgttggacaagcgtcagacagacagacagtcagtcgccagacacatctttgatcggaagtgtcatgc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  1016194 cacaaacgaaacgaatgtaatcacatgtgtcgttgttggacaagtgtgagacagacagacagtcagtcaccagacacatctttgatcataagtgtcatgc 1016293  T
Q  111 tacaaaacatttcattaaacaacactaacacatcggtaataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtcagacacactgatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||      ||||||||||||||||||    
T  1016294 tacaaaacatttcattaaacaacactaacacatcggtaataatttgagaaaataacgtagttaaaggtaatcacat------gtgtcagacacactgatt 1016387  T
Q  211 agaagtgttgacactgaaacatgataatgacgcatt 246  Q
    |||||||||||||||||||||||||||||| |||||    
T  1016388 agaagtgttgacactgaaacatgataatgaggcatt 1016423  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 37775993 - 37776046
Alignment:
Q  150 taatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtcagacac 203  Q
    |||||||||||||| || |||||||| | |||||||||||||||||| ||||||    
T  37775993 taatttgagaaaatgacataattaaatgtaatcacatgtgtcagtgtaagacac 37776046  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 9210876 - 9210826
Alignment:
Q  147 taataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtc 197  Q
    ||||||||||||||||| || ||||| || |||||||||||||||| ||||    
T  9210876 taataatttgagaaaatgacataattcaatggaatcacatgtgtcaatgtc 9210826  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 16987917 - 16987970
Alignment:
Q  144 cggtaataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtc 197  Q
    |||||||||||||||||||| |||||||| || | ||||| |||||||| ||||    
T  16987917 cggtaataatttgagaaaatcacgtaattcaatgcaatcatatgtgtcaatgtc 16987970  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 1979417 - 1979477
Alignment:
Q  144 cggtaataatttgagaaaataacgtaattaaagggaatcacat-gtgtcagtgtcagacac 203  Q
    |||||||||||||||||||| |  |||||||| | |||||||| |||||| ||||||||||    
T  1979417 cggtaataatttgagaaaattaattaattaaatgtaatcacatagtgtcaatgtcagacac 1979477  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 33950144 - 33950200
Alignment:
Q  147 taataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtcagacac 203  Q
    ||||||||||||||||| || ||||| || | ||||| ||||||| |||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacac 33950200  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 36768907 - 36768843
Alignment:
Q  140 acatcggtaataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtcagacaca 204  Q
    ||||| |||||||||||||| ||| |  ||||| || | ||||||||||||||||||| ||||||    
T  36768907 acatcagtaataatttgagagaattaattaattgaatgtaatcacatgtgtcagtgtccgacaca 36768843  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 18622416 - 18622472
Alignment:
Q  140 acatcggtaataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgt 196  Q
    |||||| ||||||||| ||||||| || |||||||| | ||||||||||||| ||||    
T  18622416 acatcgataataatttaagaaaatgacataattaaatgcaatcacatgtgtcggtgt 18622472  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 18556080 - 18556020
Alignment:
Q  144 cggtaataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtcagacaca 204  Q
    |||||||||||| | ||||| || ||||| |  | ||||||||||||||||||||||||||    
T  18556080 cggtaataatttaataaaatgacataattgactgtaatcacatgtgtcagtgtcagacaca 18556020  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 31667431 - 31667483
Alignment:
Q  145 ggtaataatttgagaaaataacgtaattaaagggaatcacatgtgtcagtgtc 197  Q
    ||||||||||| ||||||| || |||||||| | ||||||||||||| |||||    
T  31667431 ggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtc 31667483  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 43609869 - 43609825
Alignment:
Q  147 taataatttgagaaaataacgtaattaaagggaatcacatgtgtc 191  Q
    |||||||||||||||||||| ||||| || | |||||||||||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

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