View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21235_high_38 (Length: 232)
Name: NF21235_high_38
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21235_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 11022933 - 11023145
Alignment:
| Q |
1 |
acaaacttactactcttccaaagactttagaaggagtaatcagcgaagatacatttcagaaaactagatcctatagccttgttcacaggtttttattttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11022933 |
acaaacttactactcttccaaagactttagaaggagtaatcagcgaagatacatttcagaaaactagatcctatagccttgatcacaggtttttattttg |
11023032 |
T |
|
| Q |
101 |
ttttatgtagatttcttatcctattagatgttgatgtgtaattatgaagttttattccggtatgtcttgctagtaactcttatacatggctgttcactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023033 |
ttttatgtagatttcttatcctattagatgttgatgtgtaattatgaagttttattccagtatgtcttgctagtaactcttatacatggctgttcactat |
11023132 |
T |
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| Q |
201 |
ttcagtcgcttcc |
213 |
Q |
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||||||||||||| |
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| T |
11023133 |
ttcagtcgcttcc |
11023145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 29813633 - 29813554
Alignment:
| Q |
2 |
caaacttactactcttccaaagactttagaaggagtaatcagcgaagatacatttcagaaaactagatcctatagccttg |
81 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||| |||| | |||| ||||| ||||| ||||||| |||| |
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| T |
29813633 |
caaacttcctactcttccaaagtctttagaaggagtaatcagccaagagaaatttgagaaatctagagcctatagtcttg |
29813554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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