View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21235_high_6 (Length: 744)

Name: NF21235_high_6
Description: NF21235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21235_high_6
NF21235_high_6
[»] chr4 (23 HSPs)
chr4 (164-729)||(23453087-23453653)
chr4 (168-442)||(23868733-23869007)
chr4 (168-448)||(24307224-24307504)
chr4 (164-441)||(23408544-23408821)
chr4 (168-445)||(23885828-23886105)
chr4 (164-444)||(23402071-23402351)
chr4 (168-446)||(23415708-23415986)
chr4 (168-446)||(26832736-26833014)
chr4 (168-446)||(26434025-26434303)
chr4 (168-448)||(26435805-26436085)
chr4 (168-442)||(34662044-34662318)
chr4 (7-133)||(23401914-23402040)
chr4 (7-130)||(24307063-24307186)
chr4 (7-133)||(23408852-23408978)
chr4 (7-124)||(23868572-23868689)
chr4 (7-124)||(26832575-26832692)
chr4 (257-389)||(23451788-23451920)
chr4 (7-124)||(26433864-26433981)
chr4 (7-124)||(26435644-26435761)
chr4 (7-127)||(23453690-23453810)
chr4 (7-130)||(23416021-23416144)
chr4 (7-124)||(23885667-23885784)
chr4 (24-116)||(34662370-34662462)
[»] chr1 (6 HSPs)
chr1 (168-438)||(41670401-41670671)
chr1 (165-424)||(40795767-40796026)
chr1 (316-446)||(33216594-33216724)
chr1 (168-418)||(29391467-29391717)
chr1 (363-448)||(45576399-45576484)
chr1 (260-296)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (316-446)||(47317431-47317561)
chr7 (168-406)||(40180309-40180547)
chr7 (260-296)||(47317395-47317431)
[»] chr8 (1 HSPs)
chr8 (168-293)||(29684701-29684826)
[»] chr2 (2 HSPs)
chr2 (7-72)||(14715355-14715420)
chr2 (351-403)||(14715433-14715485)


Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 164 - 729
Target Start/End: Complemental strand, 23453653 - 23453087
Alignment:
164 tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 263  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
23453653 tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23453554  T
264 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
23453553 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc 23453454  T
364 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgagagaaaatcggtggcct 463  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||||||||||||||||    
23453453 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagatctgagagaaaatcggtggcct 23453354  T
464 ttgttgtgctcaagaatcgttagata-ttttaatttgtagtttgttatttgcnnnnnnnaaagttgtaatgaactaataggatgggctggttcttttttg 562  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
23453353 ttgttgtgctcaagaatcgttagatatttttaatttgtagtttgttatttgctttttttaaagttgtaatgaactaataggatgggctggttcttttttg 23453254  T
563 tatcatactgatgaaattaatgatatatggctttgaaaatgtttgtattgttcaatttggttgttgatgcatctgtttaaattttatcagaaagcatgag 662  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
23453253 tatcatattgatgaaattaatgatatatggctttgaaaatgtttgtattgttcaatttggttgttggtgcatctgtttaaattttatcagaaagcatgag 23453154  T
663 ttctggaatttggttaaccgtaaaaactgttacacagcttagtttgctctgattcaattatatatct 729  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23453153 ttctggaattttgttaaccgtaaaaactgttacacagcttagtttgctctgattcaattatatatct 23453087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 168 - 442
Target Start/End: Original strand, 23868733 - 23869007
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23868733 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 23868832  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
23868833 atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 23868932  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 442  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
23868933 tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 23869007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 168 - 448
Target Start/End: Original strand, 24307224 - 24307504
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24307224 gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 24307323  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
24307324 atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 24307423  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 448  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||    
24307424 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttgaga 24307504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 164 - 441
Target Start/End: Complemental strand, 23408821 - 23408544
Alignment:
164 tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
23408821 tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc 23408722  T
264 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
23408721 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac 23408622  T
364 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 441  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||    
23408621 ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga 23408544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 168 - 445
Target Start/End: Original strand, 23885828 - 23886105
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
23885828 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23885927  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
23885928 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt 23886027  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttg 445  Q
    |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||    
23886028 tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 23886105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 164 - 444
Target Start/End: Original strand, 23402071 - 23402351
Alignment:
164 tgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 263  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
23402071 tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23402170  T
264 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
23402171 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc 23402270  T
364 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagattt 444  Q
    |||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||||||||    
23402271 ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagattt 23402351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 168 - 446
Target Start/End: Complemental strand, 23415986 - 23415708
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
23415986 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23415887  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23415886 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 23415787  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 446  Q
    |||||||||||||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||||| ||||    
23415786 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagacttga 23415708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 168 - 446
Target Start/End: Original strand, 26832736 - 26833014
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
26832736 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26832835  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
26832836 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26832935  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 446  Q
    ||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||||||||    
26832936 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 26833014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 168 - 446
Target Start/End: Original strand, 26434025 - 26434303
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
26434025 gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26434124  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
26434125 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26434224  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 446  Q
    ||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||||||||    
26434225 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 26434303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 168 - 448
Target Start/End: Original strand, 26435805 - 26436085
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
26435805 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26435904  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
26435905 atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26436004  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 448  Q
    ||| || ||||||||||||||||||| ||||||||| || || || ||||| |||||||| || |||||||||||||||||    
26436005 tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttgaga 26436085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 168 - 442
Target Start/End: Complemental strand, 34662318 - 34662044
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
34662318 gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg 34662219  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    |||||||||||||||| ||||||||||| |||||||||||  | || ||||||||||| || || ||||| ||||||||||||||||| || || |||||    
34662218 atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt 34662119  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 442  Q
    ||||||||| |||||||| ||||||||||| ||||| || || |||||||| || ||||| || |||||||||||    
34662118 tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat 34662044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 23401914 - 23402040
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
23401914 gagagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagct 23402013  T
107 tcctaaggaaggtggttccgctgcagg 133  Q
     || |||||||||||||| || |||||    
23402014 accaaaggaaggtggttctgcagcagg 23402040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 24307063 - 24307186
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
24307063 gagagaagaagccagcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagct 24307162  T
107 tcctaaggaaggtggttccgctgc 130  Q
     || ||||||||||||||||||||    
24307163 accaaaggaaggtggttccgctgc 24307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 23408978 - 23408852
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
23408978 gagagaagaagccagcggagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagct 23408879  T
107 tcctaaggaaggtggttccgctgcagg 133  Q
     || |||||||||||||| || |||||    
23408878 accaaaggaaggtggttctgcagcagg 23408852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 23868572 - 23868689
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||    
23868572 gagagaagaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagct 23868671  T
107 tcctaaggaaggtggttc 124  Q
    ||| ||||||||||||||    
23868672 tccaaaggaaggtggttc 23868689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 26832575 - 26832692
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
26832575 gagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagct 26832674  T
107 tcctaaggaaggtggttc 124  Q
    ||| ||||||||||||||    
26832675 tccaaaggaaggtggttc 26832692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 257 - 389
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
257 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 356  Q
    ||||||||| |||||||| |||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
23451920 tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca 23451821  T
357 gtcagacttgttcttcctggtgaattggccaag 389  Q
    ||||| |||||||| || |||||||||||||||    
23451820 gtcaggcttgttctgcccggtgaattggccaag 23451788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 26433864 - 26433981
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||    
26433864 gagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagct 26433963  T
107 tcctaaggaaggtggttc 124  Q
    ||| ||||||||||||||    
26433964 tccaaaggaaggtggttc 26433981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 26435644 - 26435761
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||    
26435644 gagagaagaagccagcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagct 26435743  T
107 tcctaaggaaggtggttc 124  Q
    ||| ||||||||||||||    
26435744 tccaaaggaaggtggttc 26435761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 23453810 - 23453690
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||    
23453810 gagagaagaagccagcggagaagaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagct 23453711  T
107 tcctaaggaaggtggttccgc 127  Q
    ||||||||||||||| |||||    
23453710 tcctaaggaaggtggctccgc 23453690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 23416144 - 23416021
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||    
23416144 gagagaagaagccagcggagaagaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagct 23416045  T
107 tcctaaggaaggtggttccgctgc 130  Q
     || |||||||||||||| |||||    
23416044 accaaaggaaggtggttcagctgc 23416021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 23885667 - 23885784
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagct 106  Q
    |||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||    
23885667 gagagaagaagccagcagagaagaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagct 23885766  T
107 tcctaaggaaggtggttc 124  Q
    ||| ||||||||||||||    
23885767 tccaaaggaaggtggttc 23885784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 34662462 - 34662370
Alignment:
24 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagcttcctaaggaa 116  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||    
34662462 gagaagaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaa 34662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 7e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 168 - 438
Target Start/End: Original strand, 41670401 - 41670671
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    ||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||||||||| || ||||| || |||||||| ||||||||||    
41670401 gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 41670500  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||| |||||||| ||||| ||||| |||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | |||||    
41670501 atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt 41670600  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt 438  Q
    ||| || |||||| | || ||||||||||| ||||| ||||| || ||||| || || |||||||| ||||    
41670601 tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgttaccaaattcactagctctt 41670671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 165 - 424
Target Start/End: Original strand, 40795767 - 40796026
Alignment:
165 gtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 264  Q
    |||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| || ||||| || ||||||||||||||||    
40795767 gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca 40795866  T
265 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact 364  Q
    |||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| ||  | || ||||||||||| ||  | ||    
40795867 atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct 40795966  T
365 tgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaa 424  Q
     |||||||| || ||| | |||||||| ||||| || || ||||| ||||| || |||||    
40795967 cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaa 40796026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 316 - 446
Target Start/End: Original strand, 33216594 - 33216724
Alignment:
316 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc 415  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || || || ||    
33216594 acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc 33216693  T
416 tgtgactaagttcactagttcttagatttga 446  Q
    |||||| ||||| ||| ||||||| ||||||    
33216694 tgtgaccaagtttactggttcttaaatttga 33216724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 168 - 418
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    ||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || || ||||| ||   |||||| ||||| || |||||||||||||||||||    
29391467 gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg 29391566  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || ||  |  | ||    
29391567 atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt 29391666  T
368 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgt 418  Q
    |||||| ||||||||||| || ||||||||||| |||||||| || |||||    
29391667 tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 45576399 - 45576484
Alignment:
363 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 448  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || || ||||||||||| || ||||| || ||||||||||||||    
45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttgaga 45576484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
260 catcaatgatatcttcgagaagcttgctcaagaatca 296  Q
    ||||||||||||||||| |||||||||||||||||||    
33216558 catcaatgatatcttcgtgaagcttgctcaagaatca 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 316 - 446
Target Start/End: Original strand, 47317431 - 47317561
Alignment:
316 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc 415  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| || || |||||    
47317431 acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc 47317530  T
416 tgtgactaagttcactagttcttagatttga 446  Q
    |||||| ||||| ||||||||||| ||||||    
47317531 tgtgaccaagtttactagttcttaaatttga 47317561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 168 - 406
Target Start/End: Complemental strand, 40180547 - 40180309
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    ||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || |    
40180547 gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg 40180448  T
268 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 367  Q
    ||||||| ||||| || ||||| ||||| ||  |  | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | ||    
40180447 atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt 40180348  T
368 tcttcctggtgaattggccaagcatgctgtttctgaagg 406  Q
    ||||||||| |||||||| || |||||||||||||||||    
40180347 tcttcctggagaattggctaaacatgctgtttctgaagg 40180309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
260 catcaatgatatcttcgagaagcttgctcaagaatca 296  Q
    ||||||||||||||||| |||||||||||||||||||    
47317395 catcaatgatatcttcgtgaagcttgctcaagaatca 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
168 gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 267  Q
    ||||| |||||||| || |||||||| ||||| ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || |    
29684701 gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg 29684800  T
268 atatcttcgagaagcttgctcaagaa 293  Q
    |||||||  |||| || |||||||||    
29684801 atatctttaagaaactcgctcaagaa 29684826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 14715355 - 14715420
Alignment:
7 gagagatgaagccagcggagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctc 72  Q
    |||||| ||||||||| |||||||||||||||||||||||||| | ||| ||||  ||||||||||    
14715355 gagagaagaagccagctgagaagaaacccgcagaggagaagaaatacactgtcgaggagaaagctc 14715420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
351 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 403  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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